PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G32930.1 | ||||||||
Common Name | T21L14.13, ZFN2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 453aa MW: 49747.4 Da PI: 6.4369 | ||||||||
Description | zinc finger nuclease 2 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 3e-11 | 45 | 70 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff+rtG+C yG++C+++H+ AT2G32930.1 45 PGERDCQFFLRTGQCGYGNSCRYNHP 70 5789*********************9 PP | |||||||
2 | zf-CCCH | 23.3 | 1.1e-07 | 95 | 111 | 11 | 27 |
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +tG CkyG++Ck++H++ AT2G32930.1 95 ETGACKYGPTCKYHHPK 111 79*************96 PP | |||||||
3 | zf-CCCH | 35.5 | 1.7e-11 | 131 | 155 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG C++G CkF+H+ AT2G32930.1 131 GEKPCPYYMQTGLCRFGVACKFHHP 155 689*********************8 PP | |||||||
4 | zf-CCCH | 40 | 6.7e-13 | 264 | 288 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Crff+ tGtCkyGd Ck++H++ AT2G32930.1 264 RAECRFFMNTGTCKYGDDCKYSHPK 288 799********************96 PP | |||||||
5 | zf-CCCH | 32.8 | 1.2e-10 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f ++G+Ck+G++CkF H++ AT2G32930.1 308 PGQPACGNFKAYGFCKFGANCKFDHSM 334 57899********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.812 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-5 | 50 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.51 | 88 | 111 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.549 | 95 | 112 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 95 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 131 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-7 | 258 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.361 | 261 | 289 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-8 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 267 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 304 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.319 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-8 | 309 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 313 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004518 | Molecular Function | nuclease activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MSETQQQVQN STGSIRSPDK IEDTFRRMKV NEDNMEQSSP YPDRPGERDC QFFLRTGQCG 60 YGNSCRYNHP LTNLPQGIIY YRDQLPERVG QPDCETGACK YGPTCKYHHP KDRNGAGPVL 120 FNVLGLPMRQ GEKPCPYYMQ TGLCRFGVAC KFHHPHPHSQ PSNGHSAYAM SSFPSVGFPY 180 ASGMTMVSLP PATYGAIPRP QVPQSQAYMP YMVAPSQGLL PPQGWATYMT ASNPIYNMKT 240 QLDSSSSASV AVTVTSHHHS FSERAECRFF MNTGTCKYGD DCKYSHPKER LLQSPPTLLN 300 PIVLPARPGQ PACGNFKAYG FCKFGANCKF DHSMLLNPYN NTGLAMSSLP TPYPYAPPVS 360 TNLRISSPPS PSDMTTLSNG KPAAAEAQSL ETEKQDDSPT EPEKSEVEDS LPPNGSDSTS 420 LPNDKPDAET EKQDDDSAEL DSSKVQDSSD KST |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.11296 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 267604_at | 0.0 | ||||
Expression Atlas | AT2G32930 | - | ||||
AtGenExpress | AT2G32930 | - | ||||
ATTED-II | AT2G32930 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a zinc finger protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G32930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G32930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF138744 | 0.0 | AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565758.1 | 0.0 | zinc finger nuclease 2 | ||||
Swissprot | O48772 | 0.0 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | F4IUS5 | 0.0 | F4IUS5_ARATH; Zinc finger nuclease 2 | ||||
STRING | AT2G32930.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G32930.1 |
Entrez Gene | 817855 |
iHOP | AT2G32930 |
wikigenes | AT2G32930 |