PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026446253.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 351aa    MW: 38255.2 Da    PI: 9.4338
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026446253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.4e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n++ r  tf kRr+g++KK +ELS+LC++ ++ i+ ++
  XP_026446253.1 11 ITNDTARRATFKKRRKGLMKKVSELSTLCGVSACAIVNGP 50
                    89***********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MARKKVKLAY ITNDTARRAT FKKRRKGLMK KVSELSTLCG VSACAIVNGP YDRQPEIWPE  60
QSEAHRVLMR FKSLPEMDQN KKQLNQESFT YNRIGKISEQ FKKQQRENRY MEITGLYNLA  120
IAGKCSISDV LPGDLGDLAY VLEEKKKEVQ RRLSALKKAS TPVEQTSPAN ASTAISNAPN  180
ASDASTTAIP NASTNIMNPN VNVGGAYGSG VNGGTVPGGG LYGGVVNHHN QDGGVKINGT  240
GGQEFMTLDQ MRASMEALQS QPWYMDVMKP PSIPQPDEQM ANYLNLVGGD QYNKNDNQMM  300
GGGGVPPPMP AATYYNGGSL GDVVNNSNAW MMPPNNSYVP MNHIDASRNN I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDTARRATFKKRR
22226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44M-type_MADS family protein