PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026443535.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LBD

Protein Properties

Length: 293aa MW: 32860.8 Da PI: 5.8326

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026443535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.6	1.4e-35	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C+l pyfpa+qpk f+n+h+lFG+sn+lk+++ lp++ +++am+s++y++++r + v+G++++i +l+ q++q+k e++ XP_026443535.1 10 ACAACKYQRRKCSNECPLKPYFPADQPKMFQNAHRLFGVSNILKIINPLPPNLKSEAMRSIIYQSNIRDKHRVHGCIAIIEQLNFQYHQAKLEID 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_026443535.1 105 AVNAQ 109 99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MTVKGGTSQA CAACKYQRRK CSNECPLKPY FPADQPKMFQ NAHRLFGVSN ILKIINPLPP 60 NLKSEAMRSI IYQSNIRDKH RVHGCIAIIE QLNFQYHQAK LEIDAVNAQL AICRQQYNQL 120 SPAVPPSESS PSSQLQLGMG GPSNNNAMPL LTQHPFQMFD AIDNGNSNLT YNSSLDYIDN 180 KDNKDNMMNP LWPQQPYMDN NNSNNSMVTH HQPQFMGQPI PLQQLSLSDA PQDYDEMPTL 240 FDTIDDRQSF IGSKDPYESS PESSPKDTKE SIEHISENEL RNAAAGLSLT SVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-45	LBD family protein