PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026441734.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 343aa    MW: 38516.5 Da    PI: 6.8344
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026441734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.5e-1292116126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC  f + G+C+yGd+C+FaHg
  XP_026441734.1  92 FKTRLCAKFKA-GECPYGDNCNFAHG 116
                     79*********.*************9 PP

2zf-CCCH18.24.5e-06154175425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     +lC+ +  + +C+yGd+C+F H
  XP_026441734.1 154 KLCKKYCNGEECPYGDKCNFLH 175
                     6899999955************ PP

3zf-CCCH34.53.4e-11238262126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ + +   C+yGd+C+FaHg
  XP_026441734.1 238 FKTRICQKWEQ-NDCPYGDKCHFAHG 262
                     69*********.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MSVPVPQAEF YPQPFTIGSD GNAIFWPQVP IENEQSVNFS EFPPFKKPRT FEETPPPLNS  60
FENQGMNQQR MMMMMPLPQT IPQNKGMGKL FFKTRLCAKF KAGECPYGDN CNFAHGVEDI  120
LKPPPNWQEI VASHEEGRAT GNWEEDQKLI TRFKLCKKYC NGEECPYGDK CNFLHRDVGK  180
CREDSSRVRE SSAISIGTTG SVGYNVGVGR PDQPDVNGGV LNSVSDVNWG IKQQHVYFKT  240
RICQKWEQND CPYGDKCHFA HGVAELYKYG GHSEVETGST TIDLAKLIPN TNDATAPGSN  300
TAVISSKNQM VLAKKCLLNW DTKKLSRIYA DWIEPRSPTN VES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-71C3H family protein