PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026441734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 38516.5 Da PI: 6.8344 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.8 | 6.5e-12 | 92 | 116 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f + G+C+yGd+C+FaHg XP_026441734.1 92 FKTRLCAKFKA-GECPYGDNCNFAHG 116 79*********.*************9 PP | |||||||
2 | zf-CCCH | 18.2 | 4.5e-06 | 154 | 175 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+ + + +C+yGd+C+F H XP_026441734.1 154 KLCKKYCNGEECPYGDKCNFLH 175 6899999955************ PP | |||||||
3 | zf-CCCH | 34.5 | 3.4e-11 | 238 | 262 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + + C+yGd+C+FaHg XP_026441734.1 238 FKTRICQKWEQ-NDCPYGDKCHFAHG 262 69*********.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MSVPVPQAEF YPQPFTIGSD GNAIFWPQVP IENEQSVNFS EFPPFKKPRT FEETPPPLNS 60 FENQGMNQQR MMMMMPLPQT IPQNKGMGKL FFKTRLCAKF KAGECPYGDN CNFAHGVEDI 120 LKPPPNWQEI VASHEEGRAT GNWEEDQKLI TRFKLCKKYC NGEECPYGDK CNFLHRDVGK 180 CREDSSRVRE SSAISIGTTG SVGYNVGVGR PDQPDVNGGV LNSVSDVNWG IKQQHVYFKT 240 RICQKWEQND CPYGDKCHFA HGVAELYKYG GHSEVETGST TIDLAKLIPN TNDATAPGSN 300 TAVISSKNQM VLAKKCLLNW DTKKLSRIYA DWIEPRSPTN VES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-71 | C3H family protein |