PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026438267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28151.4 Da PI: 9.8463 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.1 | 8.4e-27 | 24 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie ksnrqvtfskRrng++KKA+EL+vLC+aevavi+fs+ gk y + XP_026438267.1 24 KMIEIKSNRQVTFSKRRNGLFKKASELCVLCGAEVAVIVFSPAGKAYSF 72 67999****************************************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MVAMAVKNKK ERKPSQGRKK IPIKMIEIKS NRQVTFSKRR NGLFKKASEL CVLCGAEVAV 60 IVFSPAGKAY SFGNPQVDST IKRFLTSHDN NNNNNHQLAI RPNNVHRHGF SAHEQQQLQT 120 QQQYIKVSNQ LDLEKKRGVL VEKLKKLNST NDGSDKFWWE IPIDGLSLNE LEQMKSAMEE 180 LKKTVAKRIE ELVINGAATS SSPVMMPTPF LNPNPICCMN SYAPGENLPE AKCSITATTT 240 TAIVPYDDYN C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-39 | M-type_MADS family protein |