PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026437323.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1110aa MW: 124416 Da PI: 6.6408

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026437323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.6	4.2e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026437323.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDVAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9445444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_026437323.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	123.5	1.5e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+ S+Wr+L+ XP_026437323.1 252 AAHAAASNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence
MKVHNNGISA NSGEGERKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD 60 TDSIPGYPSL PSKLICVLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSK 120 QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDVAWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAASNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKSSQW RNLQVGWDES AAGERPSRVS IWDIEPVATP 360 FYICPPPFFR PKFSNHPDHE SDVENAFKSA MPWLGDDLGG IKDPQNPMFP GLSLVQWMSM 420 QQQNPQLSAS QFPSMISSSL HNNNLTTDDP SKILNFQSHV SGGPSVHYNL PKTDQQTELL 480 QQSSLLWAQQ QQQRHQQLQN LGINAQQQQQ LHPQQQQLLQ QQQKQLQQQQ QQQQQQHQQQ 540 QQQQQHQQQQ QHHQQQQQQQ QQQSQIQQKQ LQQQQQLQNE HHQQQLLRSA SISSGLSTPT 600 QIIDQNLQKP LNYSQLQQQL PTSNPQSQQN FHNVNQNPLL LPSLPQDVQF QRQLEQQQSL 660 LQRQQQHNAH LQPLPMSQHE LQLQLLQKLQ QQQQFLSQVS PRVQPQVSQQ QQIHQQSQQL 720 QQQLPSQQPQ LGSVANFSQP LQNQQQHFPT NHLLGQQKPT AQIRAHSGLT DGDAPSCSTS 780 PSTNNCQVSG SSFLNRSHPG SGTLLEDMVA QPANSSVQEL QSKSDVRIKH ELPSMKEPEH 840 LGYRGATTDP VEASSTATSY CLDGGSLPTN FSMPNYCLDG DVQVDTPNNL LFGVNIDGLT 900 PEALISRRFG SGKDLHNLIS SYGGTTQRDI ETEISTAAIS SQSFGVTDMS FKPVCSGDGP 960 VNDNGVLNRG LWANQTPQQR MRTFTKVQKR GSVGRSIDIT RYKEYEELRY DLARMFGIEG 1020 QLEESQRSEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQL SLDGDLGSVP 1080 APTQTCSGSG SGNAWKGQYD EHSAAASFER

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence

MKVHNNGISA NSGEGERKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD  60
TDSIPGYPSL PSKLICVLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSK  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDVAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAASNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKSSQW RNLQVGWDES AAGERPSRVS IWDIEPVATP  360
FYICPPPFFR PKFSNHPDHE SDVENAFKSA MPWLGDDLGG IKDPQNPMFP GLSLVQWMSM  420
QQQNPQLSAS QFPSMISSSL HNNNLTTDDP SKILNFQSHV SGGPSVHYNL PKTDQQTELL  480
QQSSLLWAQQ QQQRHQQLQN LGINAQQQQQ LHPQQQQLLQ QQQKQLQQQQ QQQQQQHQQQ  540
QQQQQHQQQQ QHHQQQQQQQ QQQSQIQQKQ LQQQQQLQNE HHQQQLLRSA SISSGLSTPT  600
QIIDQNLQKP LNYSQLQQQL PTSNPQSQQN FHNVNQNPLL LPSLPQDVQF QRQLEQQQSL  660
LQRQQQHNAH LQPLPMSQHE LQLQLLQKLQ QQQQFLSQVS PRVQPQVSQQ QQIHQQSQQL  720
QQQLPSQQPQ LGSVANFSQP LQNQQQHFPT NHLLGQQKPT AQIRAHSGLT DGDAPSCSTS  780
PSTNNCQVSG SSFLNRSHPG SGTLLEDMVA QPANSSVQEL QSKSDVRIKH ELPSMKEPEH  840
LGYRGATTDP VEASSTATSY CLDGGSLPTN FSMPNYCLDG DVQVDTPNNL LFGVNIDGLT  900
PEALISRRFG SGKDLHNLIS SYGGTTQRDI ETEISTAAIS SQSFGVTDMS FKPVCSGDGP  960
VNDNGVLNRG LWANQTPQQR MRTFTKVQKR GSVGRSIDIT RYKEYEELRY DLARMFGIEG  1020
QLEESQRSEW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQL SLDGDLGSVP  1080
APTQTCSGSG SGNAWKGQYD EHSAAASFER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein