PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026429603.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1052aa MW: 118227 Da PI: 6.6283

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026429603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.7	3.9e-22	70	171	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026429603.1 70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDVAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 161 99***************************9445444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_026429603.1 162 SQLLLGIRRA 171 7789999997 PP
2	Auxin_resp	116.7	2e-38	196	279	1	83
Auxin_resp 1 aahaastksvFevvYnP.rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnP ras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+ S+Wr+L+ XP_026429603.1 196 AAHAAASNSPFTIFYNPsRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQ 279 79*************7899***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence
MQKDTDSIPG YPSLPSKLIC VLHNVTLHAD AETDEVYAQM TLQPVNKYDK EALLASDMGL 60 KQSKQPSEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL VARDLHDVAW 120 TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS 180 SVISSDSMHI GILAAAAHAA ASNSPFTIFY NPSRASPSEF VVPLAKYNKA MYTQVSLGMR 240 FRMMFETEES GVRRYMGTIT GISDLDPVRW KSSQWRNLQV GWDESAAGER PSRVSIWDIE 300 PVATPFYICP PPFFRPKFSN HPDHESDVEN AFKSAMPWLG DDLGGIKDPQ NPMFPGLSLV 360 QWMSMQQQNP QLSASQFPSM IPSSLHNNNL TTDDPSKILN FQSHVSGGPS VHYNLPKTDQ 420 QTELLQQSSL LWAQQQQQRH QQLQNLGINP QQQQQLHPQQ QQLLQQQQKQ LQQQQQQQQQ 480 QQQQQQQQQQ HQQQQQQQQQ HQQQHQSQIQ QKQLQQQLQN EHHQQQLLRS ASISSGLSTP 540 TQIIDQNLQK PLNYSQLQQQ LPTSNPQSQQ NFHNVNQNPV LLPSLPQDVQ FQRQLEQQQS 600 LLQRQQQQHN AHLQPLPMSQ HELQLQLLQK LQQQQQLLSQ VSPRVQPQVS QQQQIHPQSQ 660 QLQQQLPPQQ PQLGSVANFS QPLQNQHQHF STNHLQGQQK PTAQIRAHSG LTDGDAPSCS 720 TSPSTNNCQV SGSSFLNRSH PGSGTLLEDM VAQPANSSVQ ELQSKSDIRI KHELPSMKEP 780 EHLGYRGATT DPVEASSTAT SYCLDGGSLP TNFSMPNYCL DGDVQVDTPN NLLFGVNIDG 840 LTPEALMSRR FGSGKDLHNL ISGYGGTTQR DVETEISTAA ISSQSFGVTD MSFKPVCSGD 900 APVNDNGVLN RGLWANQTPQ QRMRTFTKVQ KRGSVGRSID ITRYKEYEEL RYDLARMFGI 960 EGQLEESQRS EWKLVYVDHE NDILLVGDDP WEEFVSCVQS IKILSSAEVQ QLSLDGDLGS 1020 VPAPTQTCSG SGSGNAWKGQ YDEHSAAASF ER

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence

MQKDTDSIPG YPSLPSKLIC VLHNVTLHAD AETDEVYAQM TLQPVNKYDK EALLASDMGL  60
KQSKQPSEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL VARDLHDVAW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS  180
SVISSDSMHI GILAAAAHAA ASNSPFTIFY NPSRASPSEF VVPLAKYNKA MYTQVSLGMR  240
FRMMFETEES GVRRYMGTIT GISDLDPVRW KSSQWRNLQV GWDESAAGER PSRVSIWDIE  300
PVATPFYICP PPFFRPKFSN HPDHESDVEN AFKSAMPWLG DDLGGIKDPQ NPMFPGLSLV  360
QWMSMQQQNP QLSASQFPSM IPSSLHNNNL TTDDPSKILN FQSHVSGGPS VHYNLPKTDQ  420
QTELLQQSSL LWAQQQQQRH QQLQNLGINP QQQQQLHPQQ QQLLQQQQKQ LQQQQQQQQQ  480
QQQQQQQQQQ HQQQQQQQQQ HQQQHQSQIQ QKQLQQQLQN EHHQQQLLRS ASISSGLSTP  540
TQIIDQNLQK PLNYSQLQQQ LPTSNPQSQQ NFHNVNQNPV LLPSLPQDVQ FQRQLEQQQS  600
LLQRQQQQHN AHLQPLPMSQ HELQLQLLQK LQQQQQLLSQ VSPRVQPQVS QQQQIHPQSQ  660
QLQQQLPPQQ PQLGSVANFS QPLQNQHQHF STNHLQGQQK PTAQIRAHSG LTDGDAPSCS  720
TSPSTNNCQV SGSSFLNRSH PGSGTLLEDM VAQPANSSVQ ELQSKSDIRI KHELPSMKEP  780
EHLGYRGATT DPVEASSTAT SYCLDGGSLP TNFSMPNYCL DGDVQVDTPN NLLFGVNIDG  840
LTPEALMSRR FGSGKDLHNL ISGYGGTTQR DVETEISTAA ISSQSFGVTD MSFKPVCSGD  900
APVNDNGVLN RGLWANQTPQ QRMRTFTKVQ KRGSVGRSID ITRYKEYEEL RYDLARMFGI  960
EGQLEESQRS EWKLVYVDHE NDILLVGDDP WEEFVSCVQS IKILSSAEVQ QLSLDGDLGS  1020
VPAPTQTCSG SGSGNAWKGQ YDEHSAAASF ER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein