PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026429601.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1108aa MW: 124093 Da PI: 6.6408

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026429601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.6	4.2e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026429601.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDVAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9445444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_026429601.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	116.6	2.1e-38	252	335	1	83
Auxin_resp 1 aahaastksvFevvYnP.rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnP ras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+ S+Wr+L+ XP_026429601.1 252 AAHAAASNSPFTIFYNPsRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQ 335 79*************7899***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence
MKVHNNGISA NSGEGERKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD 60 TDSIPGYPSL PSKLICVLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSK 120 QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDVAWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAASNS PFTIFYNPSR ASPSEFVVPL AKYNKAMYTQ VSLGMRFRMM 300 FETEESGVRR YMGTITGISD LDPVRWKSSQ WRNLQVGWDE SAAGERPSRV SIWDIEPVAT 360 PFYICPPPFF RPKFSNHPDH ESDVENAFKS AMPWLGDDLG GIKDPQNPMF PGLSLVQWMS 420 MQQQNPQLSA SQFPSMIPSS LHNNNLTTDD PSKILNFQSH VSGGPSVHYN LPKTDQQTEL 480 LQQSSLLWAQ QQQQRHQQLQ NLGINPQQQQ QLHPQQQQLL QQQQKQLQQQ QQQQQQQQQQ 540 QQQQQQHQQQ QQQQQQHQQQ HQSQIQQKQL QQQLQNEHHQ QQLLRSASIS SGLSTPTQII 600 DQNLQKPLNY SQLQQQLPTS NPQSQQNFHN VNQNPVLLPS LPQDVQFQRQ LEQQQSLLQR 660 QQQQHNAHLQ PLPMSQHELQ LQLLQKLQQQ QQLLSQVSPR VQPQVSQQQQ IHPQSQQLQQ 720 QLPPQQPQLG SVANFSQPLQ NQHQHFSTNH LQGQQKPTAQ IRAHSGLTDG DAPSCSTSPS 780 TNNCQVSGSS FLNRSHPGSG TLLEDMVAQP ANSSVQELQS KSDIRIKHEL PSMKEPEHLG 840 YRGATTDPVE ASSTATSYCL DGGSLPTNFS MPNYCLDGDV QVDTPNNLLF GVNIDGLTPE 900 ALMSRRFGSG KDLHNLISGY GGTTQRDVET EISTAAISSQ SFGVTDMSFK PVCSGDAPVN 960 DNGVLNRGLW ANQTPQQRMR TFTKVQKRGS VGRSIDITRY KEYEELRYDL ARMFGIEGQL 1020 EESQRSEWKL VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSAEVQQLSL DGDLGSVPAP 1080 TQTCSGSGSG NAWKGQYDEH SAAASFER

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence

MKVHNNGISA NSGEGERKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD  60
TDSIPGYPSL PSKLICVLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSK  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDVAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAASNS PFTIFYNPSR ASPSEFVVPL AKYNKAMYTQ VSLGMRFRMM  300
FETEESGVRR YMGTITGISD LDPVRWKSSQ WRNLQVGWDE SAAGERPSRV SIWDIEPVAT  360
PFYICPPPFF RPKFSNHPDH ESDVENAFKS AMPWLGDDLG GIKDPQNPMF PGLSLVQWMS  420
MQQQNPQLSA SQFPSMIPSS LHNNNLTTDD PSKILNFQSH VSGGPSVHYN LPKTDQQTEL  480
LQQSSLLWAQ QQQQRHQQLQ NLGINPQQQQ QLHPQQQQLL QQQQKQLQQQ QQQQQQQQQQ  540
QQQQQQHQQQ QQQQQQHQQQ HQSQIQQKQL QQQLQNEHHQ QQLLRSASIS SGLSTPTQII  600
DQNLQKPLNY SQLQQQLPTS NPQSQQNFHN VNQNPVLLPS LPQDVQFQRQ LEQQQSLLQR  660
QQQQHNAHLQ PLPMSQHELQ LQLLQKLQQQ QQLLSQVSPR VQPQVSQQQQ IHPQSQQLQQ  720
QLPPQQPQLG SVANFSQPLQ NQHQHFSTNH LQGQQKPTAQ IRAHSGLTDG DAPSCSTSPS  780
TNNCQVSGSS FLNRSHPGSG TLLEDMVAQP ANSSVQELQS KSDIRIKHEL PSMKEPEHLG  840
YRGATTDPVE ASSTATSYCL DGGSLPTNFS MPNYCLDGDV QVDTPNNLLF GVNIDGLTPE  900
ALMSRRFGSG KDLHNLISGY GGTTQRDVET EISTAAISSQ SFGVTDMSFK PVCSGDAPVN  960
DNGVLNRGLW ANQTPQQRMR TFTKVQKRGS VGRSIDITRY KEYEELRYDL ARMFGIEGQL  1020
EESQRSEWKL VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SSAEVQQLSL DGDLGSVPAP  1080
TQTCSGSGSG NAWKGQYDEH SAAASFER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein