PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026420123.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 26364.9 Da PI: 9.8357

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026420123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73	2.4e-23	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie + rqvtfskRr g++KKA+ELS+LC+ae+a+i+fs+ gk + + XP_026420123.1 17 KRIEKEDARQVTFSKRRGGVFKKAHELSTLCGAEIAIIVFSPAGKPFSF 65 79******************************************96655 PP
2	K-box	15.9	5.4e-07	113	172	16	75
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 +l+ e ++ + ++++++++++ +e++++L + eL+qL ++++ k+ ++ +elll+ XP_026420123.1 113 RLEAEKKRGAELKKMMKENKKQFWWENIDDLGVHELEQLSAAIDDLKIKVADRADELLLT 172 45555555566667899**************************99888998888888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MAVTRKPSMG RQKIEIKRIE KEDARQVTFS KRRGGVFKKA HELSTLCGAE IAIIVFSPAG 60 KPFSFTHPHN IIDRYLSGNS RQANNMSPTP LVAAHHEAKI RELNREYTEA LSRLEAEKKR 120 GAELKKMMKE NKKQFWWENI DDLGVHELEQ LSAAIDDLKI KVADRADELL LTSYLPGKNP 180 GMSSNGTSHS ENSSTITFET KPTIIPNHQQ IHTSSLPHHG YGTDFGLYGR NGLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-41	M-type_MADS family protein