PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026415352.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 272aa MW: 30504.7 Da PI: 5.0662

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026415352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.3	3.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t+ ++++v++ ++fdfl ++v + XP_026415352.1 6 DTRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKQCVQSFNVFDFLKETVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MRKKLDTRFP ASRIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLQRGAK 60 TMSSLHLKQC VQSFNVFDFL KETVSKVPDL GGSDAAGDDR HVSRRRKAAD DEDHDSDEEA 120 KRTRMQEAGH SSTSGRGRGR GRGRGRGRGR AIERESTHAE KCEDDLDMSP QDDKQKLNTK 180 RLDNGAEDDE SRQSTALDSS GNQVLRNFDL NVELQDGHTS AHPVSRELPP ELKHEEYPGW 240 SLADVDKMAI DPLQLAQLNQ KIGEDEDYDE EG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR
3	138	147	RGRGRGRGRG
4	138	148	RGRGRGRGRGR
5	140	149	RGRGRGRGRG
6	140	150	RGRGRGRGRGR
7	142	151	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-65	NF-YC family protein