PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026411666.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family LBD
Protein Properties Length: 238aa    MW: 25859 Da    PI: 7.2342
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026411666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.31.7e-40211211100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf +eq + +fa+vhk+FGasnv+kll +lp ++r da+ +++yeA  r+rdPvyG+vg+i++lqqq+ +l+ael
  XP_026411666.1  21 PCGACKFLRRKCVKGCIFAPYFDSEQgSTHFAAVHKIFGASNVSKLLLRLPAHKRVDAVVTICYEALSRIRDPVYGCVGHIFALQQQVVNLQAEL 115
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     a ++++
  XP_026411666.1 116 AFVQAH 121
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MMMSSGSSSS SSSSSNGGNG PCGACKFLRR KCVKGCIFAP YFDSEQGSTH FAAVHKIFGA  60
SNVSKLLLRL PAHKRVDAVV TICYEALSRI RDPVYGCVGH IFALQQQVVN LQAELAFVQA  120
HLSTLELTSH QQHSLVSSPT PSSALTTVHA SSDMLSSETS NMSTLFTSYQ SQHQQLDGIP  180
TMLDTRRYCS PPTIAAQNQQ QQNNVEGDGD LQTLAREFLS IYFPESAKLQ TSNDSNSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-63LBD family protein