PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G45410.1 | ||||||||
Common Name | ASL23, F4L23.8, LBD19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20980 Da PI: 7.8555 | ||||||||
Description | LOB domain-containing protein 19 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++l+aela++ AT2G45410.1 16 PCGACKFLRRKCVKGCVFAPYFDAEQgTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHV 113 7***********************9989********************************************************************99 PP DUF260 98 kee 100 +++ AT2G45410.1 114 QAR 116 976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 15 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-38 | 16 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK 60 MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ HQVMNLQAEL AHVQARLSTI 120 QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR 180 YLPAVKLPAC T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 12 | 114 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 12 | 114 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145361020 | 0.0 | ||||
Expression Atlas | AT2G45410 | - | ||||
AtGenExpress | AT2G45410 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G45410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G45410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473856 | 0.0 | AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_182065.1 | 1e-142 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 1e-143 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A178VSY1 | 1e-141 | A0A178VSY1_ARATH; LBD19 | ||||
STRING | AT2G45410.1 | 1e-142 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 | Representative plant | OGRP405 | 15 | 100 |
Link Out ? help Back to Top | |
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Phytozome | AT2G45410.1 |
Entrez Gene | 819149 |
iHOP | AT2G45410 |
wikigenes | AT2G45410 |
Publications ? help Back to Top | |||
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