PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026409814.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 450aa    MW: 49354.5 Da    PI: 8.7708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026409814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.4e-06120141325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       +C+++++   C++ +rCkF H
  XP_026409814.1 120 KTICKYWMA-EKCSFRERCKFLH 141
                     579******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MKNMKNSSAV SQKKFLTELR LGGVPTTDIV CKHWRAGRCT KNPCPFRHSE LPQPSSNNGM  60
GSKRSNVIQQ PSHQGNFSVS DSVSRRKPNT YIRADSTEPS KWGRDHGGPK GPGLVKDPQK  120
TICKYWMAEK CSFRERCKFL HKWFVSDDFT MLAQLAGHEE KKAITGIAFP KGSDKLYSGN  180
KDGTLRVWDC QTGQSAAVIS VGSEVGCVIS EGPWVFVGIN NCVKAWNIQT QRELSLSGPS  240
GLVYALAVEK EMLFGGTQDG SILIWKFVAA TNGFEPAAVL KGHSASVLTL VVGNNILYSG  300
SMDNTIRLWS LETLQCIYTL TDHTSAVTSV LCWDQLLLSC SLDKTIKVWA ITESGKLEVT  360
YTKQEEQGLL ALSGMPDAQG KPVLMCSCND NTVRLYDLPS FKERGKICAK GEIRAIHTAL  420
GLFFTGDGNG DLKVWKWTEQ SPAAAATIQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-161C3H family protein