PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026407444.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 446aa MW: 50066 Da PI: 6.9054

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026407444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.5	4e-12	95	119	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++rtG C+yG +C+F+H+ XP_026407444.1 95 DEPDCSFYLRTGACRYGLNCRFNHP 119 6899********************8 PP
2	zf-CCCH	35.9	1.3e-11	141	167	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG C++ H++ XP_026407444.1 141 PGEPECKYYLKTGACKYGKDCRYDHPR 167 5799*********************96 PP
3	zf-CCCH	26.9	8.5e-09	188	212	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++r G Ck+ +C+F+H+ XP_026407444.1 188 GEKECPFYMRVGSCKFATNCRFHHP 212 7899********************9 PP
4	zf-CCCH	33.2	8.8e-11	330	356	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+r+G Cky + C+F H++ XP_026407444.1 330 PGERECQYFMRNGDCKYRSACRFDHPK 356 5789*********************96 PP
5	zf-CCCH	32.3	1.7e-10	374	399	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e+C++++ +G+Ck+G+ CkF H+ XP_026407444.1 374 PGEEICSHYSHYGICKFGPACKFDHP 399 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MGEEEDYEKI NSSSSKSQEQ EEIKIESSSP SHSSVAHHHE IHHDPAIIHA LEGDFHNLRL 60 QQHQQHEEIN GVNYHKDAIY SNKNGSFLLY PLRPDEPDCS FYLRTGACRY GLNCRFNHPH 120 NRNKEHVVKE KDNKEEYPER PGEPECKYYL KTGACKYGKD CRYDHPREKT AVGPAQHFNF 180 LGLPIRPGEK ECPFYMRVGS CKFATNCRFH HPDPGEAVGL DPSSGYHSGM SVPLQSGGTS 240 QSSASWSSPR TSNDPVPYAS RSYSGLTASP SQGTQQNLEW DGYQGPVYPP KGNTNSASAP 300 FKSNFIRKTD GSKHYRHQQQ MATDEFPERP GERECQYFMR NGDCKYRSAC RFDHPKNRLQ 360 NSPALSPMGL PLRPGEEICS HYSHYGICKF GPACKFDHPL NYDGSSAAAP TMSTSDQLTH 420 FVDAASSGSS RMTGYENGDE AVIQSL

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MGEEEDYEKI NSSSSKSQEQ EEIKIESSSP SHSSVAHHHE IHHDPAIIHA LEGDFHNLRL  60
QQHQQHEEIN GVNYHKDAIY SNKNGSFLLY PLRPDEPDCS FYLRTGACRY GLNCRFNHPH  120
NRNKEHVVKE KDNKEEYPER PGEPECKYYL KTGACKYGKD CRYDHPREKT AVGPAQHFNF  180
LGLPIRPGEK ECPFYMRVGS CKFATNCRFH HPDPGEAVGL DPSSGYHSGM SVPLQSGGTS  240
QSSASWSSPR TSNDPVPYAS RSYSGLTASP SQGTQQNLEW DGYQGPVYPP KGNTNSASAP  300
FKSNFIRKTD GSKHYRHQQQ MATDEFPERP GERECQYFMR NGDCKYRSAC RFDHPKNRLQ  360
NSPALSPMGL PLRPGEEICS HYSHYGICKF GPACKFDHPL NYDGSSAAAP TMSTSDQLTH  420
FVDAASSGSS RMTGYENGDE AVIQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	5e-87	C3H family protein