PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_026403643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 504aa MW: 55465.9 Da PI: 7.4831 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.9 | 2.2e-41 | 197 | 273 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ dl++akeyhrrh+vCe hsk p+v+v+gle+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+ XP_026403643.1 197 RCQVEGCDLDLTSAKEYHRRHRVCESHSKFPNVTVAGLERRFCQQCSRFHDLAEFDEKKRSCRRRLNDHNSRRRKPP 273 6**************************************************************************86 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 504 aa Download sequence |
MSSCSVMEWN TKTALQWDWE NLVMFSGKVN EIPNKTSQQP TDWGVEGDGG GIDNGSFYLP 60 SGGGRGGAGA GGHSGSDLGN GSSSKSSISA SIDSSGKVGS SKSKFNLDTI EDSTNHPTRK 120 RELGRVEDTG SSPTVGVSVV GSGEPLIGLK LGKRTYFEDV CAGSLVKPSS YTVIPAASAA 180 AVTKRSRASY QSMQTPRCQV EGCDLDLTSA KEYHRRHRVC ESHSKFPNVT VAGLERRFCQ 240 QCSRFHDLAE FDEKKRSCRR RLNDHNSRRR KPPPESIHFS SGRLSSPFYD GRQQMSFILN 300 RVPLVHTTYP ALNPTWERRT AKPEGVDAHH SSNNELLNSI SSIHRDSGRL LSFKDTSVEV 360 VDQEGLEAST LAASNLDPTT DFRRALSLLS RNSSWDSSGT DHPEPSSLNQ LIHANHTGIA 420 QQQPVIQQSS VPHGWPTAST MEYWHPSEQQ QPTVATSHFQ EQQQQQQYPN SSQSQNNNTG 480 SHFQEFQLFK TPYENGFFSP NQLT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 254 | 271 | KKRSCRRRLNDHNSRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.1 | 4e-47 | SBP family protein |