PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026401711.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 881aa MW: 98582.3 Da PI: 8.5074

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026401711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.3e-09	310	331	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+f+a+ G+C+ Gd+C+F+H XP_026401711.1 310 QRLCKFYAA-GYCRNGDSCRFSH 331 68*9999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence
MTESVRRRSS KWDLKEDPDH FPTEIRQGSG WSGRESRSEW KVSKGLNSHD PKWSSMEARS 60 VSRNEGNSRW SSSLEPTSRN RGIEIYEFDK RDYNDMSRTM ALDGDRSYSL SMSPGLDGWR 120 EKNRSRSPKG GWSRSHRSRS RSPPHGYRRD LEGSNGGRRS GSHICGEFAE ERSIRGNSHR 180 FLHQDIQDTY EHNGRRHPGR SPGRGGSKHE KGGIRNAYTE EQMDRPRDKI SRGYEDVYHR 240 DLEKSEILRS NNISSDRPCI DFLEGNCRKG SSCRYPHHGA PSEGRGIRVR DLDRKETTVF 300 YGHDNKRESQ RLCKFYAAGY CRNGDSCRFS HEGAARGSPE GRSRDDRRGH DLDHENRLQG 360 GSKWSDKQPA DSAYDGPDAR SVTEKLVHHL SDENRSWGGP KWSDITDSHS AGNERRSSRG 420 SKWSDRDAVP EEKSNVWGND NVGEKIGVVD PRSKERSFNS QQSHLDNASR TWGGPSRDDK 480 PIDFALHKSP QWISDNSGGS MGFEEPKGSG KFLASESMIS TRDIEQYSLP INDSRGHNQD 540 SQSHITNEMS IKIGKPDATQ EVSAQPLSSF NMNIQSQTVL PTQPFNMNGG TQQQSSNPYS 600 RTLPQHVEPI KKSDLVDPRL MLQQVTSGTS MMQNVSSNET VAQLTNLSAS LAQIFGNGQH 660 LPQLYAALNP STSGLVSSHP IEPTQVIALQ PLIQLNQTTP CEKQYDPIND SIDQTDVAGG 720 GSQSPMKSIV PSSTAADPSG GDPPKISSLE EKVNASNELK QPEKVMDKKE ETVQIDADGD 780 GDGDNQGDEE GKKSKDPKGM RVFKFALVQF VKEILKPTWK EGQMSKEAHK TIVKKVVDKV 840 TSTIQAAQIP QTQEKTDQYL SYSKPKLTKL VQAYVEKHSK T

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence

MTESVRRRSS KWDLKEDPDH FPTEIRQGSG WSGRESRSEW KVSKGLNSHD PKWSSMEARS  60
VSRNEGNSRW SSSLEPTSRN RGIEIYEFDK RDYNDMSRTM ALDGDRSYSL SMSPGLDGWR  120
EKNRSRSPKG GWSRSHRSRS RSPPHGYRRD LEGSNGGRRS GSHICGEFAE ERSIRGNSHR  180
FLHQDIQDTY EHNGRRHPGR SPGRGGSKHE KGGIRNAYTE EQMDRPRDKI SRGYEDVYHR  240
DLEKSEILRS NNISSDRPCI DFLEGNCRKG SSCRYPHHGA PSEGRGIRVR DLDRKETTVF  300
YGHDNKRESQ RLCKFYAAGY CRNGDSCRFS HEGAARGSPE GRSRDDRRGH DLDHENRLQG  360
GSKWSDKQPA DSAYDGPDAR SVTEKLVHHL SDENRSWGGP KWSDITDSHS AGNERRSSRG  420
SKWSDRDAVP EEKSNVWGND NVGEKIGVVD PRSKERSFNS QQSHLDNASR TWGGPSRDDK  480
PIDFALHKSP QWISDNSGGS MGFEEPKGSG KFLASESMIS TRDIEQYSLP INDSRGHNQD  540
SQSHITNEMS IKIGKPDATQ EVSAQPLSSF NMNIQSQTVL PTQPFNMNGG TQQQSSNPYS  600
RTLPQHVEPI KKSDLVDPRL MLQQVTSGTS MMQNVSSNET VAQLTNLSAS LAQIFGNGQH  660
LPQLYAALNP STSGLVSSHP IEPTQVIALQ PLIQLNQTTP CEKQYDPIND SIDQTDVAGG  720
GSQSPMKSIV PSSTAADPSG GDPPKISSLE EKVNASNELK QPEKVMDKKE ETVQIDADGD  780
GDGDNQGDEE GKKSKDPKGM RVFKFALVQF VKEILKPTWK EGQMSKEAHK TIVKKVVDKV  840
TSTIQAAQIP QTQEKTDQYL SYSKPKLTKL VQAYVEKHSK T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-14	C3H family protein