PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026397612.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 361aa MW: 39798.8 Da PI: 9.5414

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026397612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.7e-19	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G ++W++I++ ++ gR++k+c++rw + XP_026397612.1 14 KGPWSPEEDDLLQRLVTKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 59 79****************************.*********985 PP
2	Myb_DNA-binding	55.7	1.1e-17	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eEde++++a++++G++ W+tIar + gRt++ +k++w++ XP_026397612.1 68 AFSSEEDEKIIQAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MASSSSRKDL DRIKGPWSPE EDDLLQRLVT KHGARNWSLI SKSIPGRSGK SCRLRWCNQL 60 SPQVEHRAFS SEEDEKIIQA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCCSISS 120 DNEDQEPQEQ PLKRSASGGI TGKTISGIYF NPSSPTGSDF SDSSHPFLSS SPPHVYRPVP 180 RTPAATGVLP TPEKSSNNDL QTSLNLCLSL PGTITDSSSS DGPNQNQNQN HPVRSNPVIR 240 SSPPPQLQTS LPQPLPPTPA TNTQLLPPLP PLPQMQQFVP QHMVLNHQNQ NRQFPNSFSI 300 HPPAEKPFVP FSPEFLSVMQ DMIKNEVRNY MSGLEQGGIC LQAADGIRSA VVKRMGISKI 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MASSSSRKDL DRIKGPWSPE EDDLLQRLVT KHGARNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPQVEHRAFS SEEDEKIIQA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCCSISS  120
DNEDQEPQEQ PLKRSASGGI TGKTISGIYF NPSSPTGSDF SDSSHPFLSS SPPHVYRPVP  180
RTPAATGVLP TPEKSSNNDL QTSLNLCLSL PGTITDSSSS DGPNQNQNQN HPVRSNPVIR  240
SSPPPQLQTS LPQPLPPTPA TNTQLLPPLP PLPQMQQFVP QHMVLNHQNQ NRQFPNSFSI  300
HPPAEKPFVP FSPEFLSVMQ DMIKNEVRNY MSGLEQGGIC LQAADGIRSA VVKRMGISKI  360
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	9e-72	MYB family protein