PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_026387065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 476aa MW: 53118.5 Da PI: 7.8102 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.3 | 7.1e-10 | 76 | 101 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C+yG +C+++H+ XP_026387065.1 76 PGEADCAHFVRTGSCRYGLKCRYNHP 101 57899********************9 PP | |||||||
2 | zf-CCCH | 33.8 | 5.8e-11 | 162 | 187 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG +C+++H+ XP_026387065.1 162 PGEPDCGHYLRTGACRYGLNCRYNHP 187 5789*********************8 PP | |||||||
3 | zf-CCCH | 31.4 | 3.1e-10 | 202 | 227 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G CkyG +C+F H XP_026387065.1 202 PGQVECKYYLRPGGCKYGTTCRFQHI 227 5789*********************5 PP | |||||||
4 | zf-CCCH | 23.3 | 1.2e-07 | 249 | 273 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r+G Ck+ +C+++H+ XP_026387065.1 249 GETECPHYMRNGSCKFALNCRCHHP 273 7789********************8 PP | |||||||
5 | zf-CCCH | 24.7 | 4e-08 | 397 | 422 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ + CkF H++ XP_026387065.1 397 GEKECEYFMKNGDCKFKSYCKFDHPK 422 7899********************96 PP | |||||||
6 | zf-CCCH | 32.9 | 1.1e-10 | 443 | 465 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++r+G+Ck+G+ C++ H+p XP_026387065.1 443 ACSYYSRYGICKFGPACRYDHPP 465 6********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 476 aa Download sequence |
MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR 60 PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVQVG KGKDKETEGF 120 KERQWQLNRG FERKRSQSWG DSAIEEEEEA EVNGSLHHPV RPGEPDCGHY LRTGACRYGL 180 NCRYNHPSRS KRQEKEGYEE TPGQVECKYY LRPGGCKYGT TCRFQHIQEK PAVASTLDLN 240 FLGLPVRPGE TECPHYMRNG SCKFALNCRC HHPNPTDVGV RDPHLRYQNC RPSPVPSSVL 300 SQPGVPSWSM ARTSNETMVS YMDAAPSYAP LLSAPQGAHP SMEWNGYLPP QQNPMYPPAV 360 NMGPPVPLVL NGPSKKTGGF AHYQQQMPID EYPERPGEKE CEYFMKNGDC KFKSYCKFDH 420 PKNRASKCVL SPMGLPLRPE EIACSYYSRY GICKFGPACR YDHPPNSGSS ISGVVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-85 | C3H family protein |