PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026387064.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 486aa MW: 54207.6 Da PI: 7.5949

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026387064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7.3e-10	76	101	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C+yG +C+++H+ XP_026387064.1 76 PGEADCAHFVRTGSCRYGLKCRYNHP 101 57899********************9 PP
2	zf-CCCH	33.8	5.9e-11	160	185	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG +C+++H+ XP_026387064.1 160 PGEPDCGHYLRTGACRYGLNCRYNHP 185 5789*********************8 PP
3	zf-CCCH	31.4	3.2e-10	212	237	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G CkyG +C+F H XP_026387064.1 212 PGQVECKYYLRPGGCKYGTTCRFQHI 237 5789*********************5 PP
4	zf-CCCH	23.2	1.2e-07	259	283	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r+G Ck+ +C+++H+ XP_026387064.1 259 GETECPHYMRNGSCKFALNCRCHHP 283 7789********************8 PP
5	zf-CCCH	24.7	4.1e-08	407	432	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ + CkF H++ XP_026387064.1 407 GEKECEYFMKNGDCKFKSYCKFDHPK 432 7899********************96 PP
6	zf-CCCH	32.9	1.1e-10	453	475	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++r+G+Ck+G+ C++ H+p XP_026387064.1 453 ACSYYSRYGICKFGPACRYDHPP 475 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR 60 PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVGKG KDKETEGFKE 120 RQWQLNRGFE RKRSQSWGDS AIEEEEEAEV NGSLHHPVRP GEPDCGHYLR TGACRYGLNC 180 RYNHPSRSKR QVHSLSVSHE PDQEKEGYEE TPGQVECKYY LRPGGCKYGT TCRFQHIQEK 240 PAVASTLDLN FLGLPVRPGE TECPHYMRNG SCKFALNCRC HHPNPTDVGV RDPHLRYQNC 300 RPSPVPSSVL SQPGVPSWSM ARTSNETMVS YMDAAPSYAP LLSAPQGAHP SMEWNGYLPP 360 QQNPMYPPAV NMGPPVPLVL NGPSKKTGGF AHYQQQMPID EYPERPGEKE CEYFMKNGDC 420 KFKSYCKFDH PKNRASKCVL SPMGLPLRPE EIACSYYSRY GICKFGPACR YDHPPNSGSS 480 ISGVVG

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR  60
PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVGKG KDKETEGFKE  120
RQWQLNRGFE RKRSQSWGDS AIEEEEEAEV NGSLHHPVRP GEPDCGHYLR TGACRYGLNC  180
RYNHPSRSKR QVHSLSVSHE PDQEKEGYEE TPGQVECKYY LRPGGCKYGT TCRFQHIQEK  240
PAVASTLDLN FLGLPVRPGE TECPHYMRNG SCKFALNCRC HHPNPTDVGV RDPHLRYQNC  300
RPSPVPSSVL SQPGVPSWSM ARTSNETMVS YMDAAPSYAP LLSAPQGAHP SMEWNGYLPP  360
QQNPMYPPAV NMGPPVPLVL NGPSKKTGGF AHYQQQMPID EYPERPGEKE CEYFMKNGDC  420
KFKSYCKFDH PKNRASKCVL SPMGLPLRPE EIACSYYSRY GICKFGPACR YDHPPNSGSS  480
ISGVVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-86	C3H family protein