PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026387063.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 488aa MW: 54434.9 Da PI: 7.5949

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026387063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7.3e-10	76	101	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C+yG +C+++H+ XP_026387063.1 76 PGEADCAHFVRTGSCRYGLKCRYNHP 101 57899********************9 PP
2	zf-CCCH	33.7	5.9e-11	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG +C+++H+ XP_026387063.1 162 PGEPDCGHYLRTGACRYGLNCRYNHP 187 5789*********************8 PP
3	zf-CCCH	31.4	3.2e-10	214	239	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G CkyG +C+F H XP_026387063.1 214 PGQVECKYYLRPGGCKYGTTCRFQHI 239 5789*********************5 PP
4	zf-CCCH	23.2	1.2e-07	261	285	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r+G Ck+ +C+++H+ XP_026387063.1 261 GETECPHYMRNGSCKFALNCRCHHP 285 7789********************8 PP
5	zf-CCCH	24.7	4.1e-08	409	434	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ + CkF H++ XP_026387063.1 409 GEKECEYFMKNGDCKFKSYCKFDHPK 434 7899********************96 PP
6	zf-CCCH	32.9	1.1e-10	455	477	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++r+G+Ck+G+ C++ H+p XP_026387063.1 455 ACSYYSRYGICKFGPACRYDHPP 477 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR 60 PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVQVG KGKDKETEGF 120 KERQWQLNRG FERKRSQSWG DSAIEEEEEA EVNGSLHHPV RPGEPDCGHY LRTGACRYGL 180 NCRYNHPSRS KRQVHSLSVS HEPDQEKEGY EETPGQVECK YYLRPGGCKY GTTCRFQHIQ 240 EKPAVASTLD LNFLGLPVRP GETECPHYMR NGSCKFALNC RCHHPNPTDV GVRDPHLRYQ 300 NCRPSPVPSS VLSQPGVPSW SMARTSNETM VSYMDAAPSY APLLSAPQGA HPSMEWNGYL 360 PPQQNPMYPP AVNMGPPVPL VLNGPSKKTG GFAHYQQQMP IDEYPERPGE KECEYFMKNG 420 DCKFKSYCKF DHPKNRASKC VLSPMGLPLR PEEIACSYYS RYGICKFGPA CRYDHPPNSG 480 SSISGVVG

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR  60
PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVQVG KGKDKETEGF  120
KERQWQLNRG FERKRSQSWG DSAIEEEEEA EVNGSLHHPV RPGEPDCGHY LRTGACRYGL  180
NCRYNHPSRS KRQVHSLSVS HEPDQEKEGY EETPGQVECK YYLRPGGCKY GTTCRFQHIQ  240
EKPAVASTLD LNFLGLPVRP GETECPHYMR NGSCKFALNC RCHHPNPTDV GVRDPHLRYQ  300
NCRPSPVPSS VLSQPGVPSW SMARTSNETM VSYMDAAPSY APLLSAPQGA HPSMEWNGYL  360
PPQQNPMYPP AVNMGPPVPL VLNGPSKKTG GFAHYQQQMP IDEYPERPGE KECEYFMKNG  420
DCKFKSYCKF DHPKNRASKC VLSPMGLPLR PEEIACSYYS RYGICKFGPA CRYDHPPNSG  480
SSISGVVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-86	C3H family protein