PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026384152.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 724aa MW: 78745 Da PI: 6.5535

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026384152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_026384152.1 305 PCPDFRK-GACRRGDLCEYAHG 325 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MCVGPEPTQS NSSSSSSATA SEETKSPTRS MNQLMTETED SSLLELAANN DLDEFKQLVE 60 RDASAVNQIG LWYGRKKGSK QMVLEHRTPL MVAATYGSVD VLKFILSFTE ADVNRSCGPD 120 RSTALHCAAS GGSVNADEVV NLLLLSGADA SLVDANGCRA ADVIVVSSKL PNLKASLETL 180 LADVGSDVPA TGRNLRISTT CIRSNPSSPE NGSPSSVSDL LGSLTMNVDD LHMSANSEKK 240 EYPVDPSLPD IRNSIYSSDE FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHISEE 360 LRPLYMSSGS VVPSPRSSAV AMDMAAAMNL YPASPSSASV MSPSPFASPM SPSGNSISHS 420 SLAWPQPNVP ALHLPGSNLQ SSRLRSSLNA RDIPSEEYSM LQEQHQLLSE LSCFSQQQRL 480 SSSSLNIPIR TKTLTPSNLE ELFSAEITRS PRYADQAASS SVFSPSHKSA VLSQFQQQQS 540 MLSPINTNAF SPKNVDYSML QASYGSPGRM SPHNMEPISP GSARLSVFSQ REKLQQQQQQ 600 QFRSLSARDL GSNSSAVVGS PVKSWTKWGS PNGKLDWGVQ GDELGHLRRS NSLEPGHNGV 660 EERDLSWVHS LVKESPPEIK GKVIPSSPPA PSGEGSNSNL QNESVDNTVL GAWLEQMQLD 720 QLVA

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MCVGPEPTQS NSSSSSSATA SEETKSPTRS MNQLMTETED SSLLELAANN DLDEFKQLVE  60
RDASAVNQIG LWYGRKKGSK QMVLEHRTPL MVAATYGSVD VLKFILSFTE ADVNRSCGPD  120
RSTALHCAAS GGSVNADEVV NLLLLSGADA SLVDANGCRA ADVIVVSSKL PNLKASLETL  180
LADVGSDVPA TGRNLRISTT CIRSNPSSPE NGSPSSVSDL LGSLTMNVDD LHMSANSEKK  240
EYPVDPSLPD IRNSIYSSDE FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHISEE  360
LRPLYMSSGS VVPSPRSSAV AMDMAAAMNL YPASPSSASV MSPSPFASPM SPSGNSISHS  420
SLAWPQPNVP ALHLPGSNLQ SSRLRSSLNA RDIPSEEYSM LQEQHQLLSE LSCFSQQQRL  480
SSSSLNIPIR TKTLTPSNLE ELFSAEITRS PRYADQAASS SVFSPSHKSA VLSQFQQQQS  540
MLSPINTNAF SPKNVDYSML QASYGSPGRM SPHNMEPISP GSARLSVFSQ REKLQQQQQQ  600
QFRSLSARDL GSNSSAVVGS PVKSWTKWGS PNGKLDWGVQ GDELGHLRRS NSLEPGHNGV  660
EERDLSWVHS LVKESPPEIK GKVIPSSPPA PSGEGSNSNL QNESVDNTVL GAWLEQMQLD  720
QLVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	81	GRKKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein