PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026379680.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 701aa MW: 78206 Da PI: 8.6767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026379680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_026379680.1 82 KCDKCVREFCSPINYRRHIRLH 103 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MPAANLRSSN NLDAMMFGQN LVKADETNDS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF 60 LSSLDPQDLS GWPLYPKVPM QKCDKCVREF CSPINYRRHI RLHRRSLKIE KDSTKIRDLM 120 GAFWDKLSMD EAKDVISFDT VMLEGVPGSA VVRALASFIR KPGFFSLPQS YVKAGAALLD 180 LIQGRPSRFP ISSTELFSIL HDASEKTFLC PGTAISMQKF MFDGEPGKIG LEMKNLIACT 240 SFLVEQKLIK ECLVEKDAEA LRCQKLLVEE EEAAQRRQFE LLERKRLKKL RQKEQKAKEQ 300 VEVEDVDLKE DSSISVEVSE STSNSHTPEL SIVRPSSTDE GCDNADNADK AEIDMAYETS 360 NSTDPQNFDH QHVQQGNSQQ QGDGQQHGNG RQRAVANRRS RRSEPNSFRA GHVVPVSKLG 420 AIQKRGNYRD LKTTPLANKS QRVWTRKTKI ENERISSNAV VQRDTRDEQD VGGSGDLLIG 480 SIPVTLGECS TSSQIKVDQC TSDYQPGQRN ISSGSMQEKS VKIELVQSGT NKSKTKHWRP 540 VGRRERRKRE KIEFVGESSN LIDDSCIPRN NSDGCSGLEG AGSSEATKEA HSTGRKLFSS 600 HEVKAFLAQR WKEAIASDHV KLVLSPETEL PECVENQDVQ ATAHIPSDSG NRSILGSAEN 660 RLAGTNGPER AKNGNSKHAK FKAKPERGYK LKYIPKQRNS S

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MPAANLRSSN NLDAMMFGQN LVKADETNDS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF  60
LSSLDPQDLS GWPLYPKVPM QKCDKCVREF CSPINYRRHI RLHRRSLKIE KDSTKIRDLM  120
GAFWDKLSMD EAKDVISFDT VMLEGVPGSA VVRALASFIR KPGFFSLPQS YVKAGAALLD  180
LIQGRPSRFP ISSTELFSIL HDASEKTFLC PGTAISMQKF MFDGEPGKIG LEMKNLIACT  240
SFLVEQKLIK ECLVEKDAEA LRCQKLLVEE EEAAQRRQFE LLERKRLKKL RQKEQKAKEQ  300
VEVEDVDLKE DSSISVEVSE STSNSHTPEL SIVRPSSTDE GCDNADNADK AEIDMAYETS  360
NSTDPQNFDH QHVQQGNSQQ QGDGQQHGNG RQRAVANRRS RRSEPNSFRA GHVVPVSKLG  420
AIQKRGNYRD LKTTPLANKS QRVWTRKTKI ENERISSNAV VQRDTRDEQD VGGSGDLLIG  480
SIPVTLGECS TSSQIKVDQC TSDYQPGQRN ISSGSMQEKS VKIELVQSGT NKSKTKHWRP  540
VGRRERRKRE KIEFVGESSN LIDDSCIPRN NSDGCSGLEG AGSSEATKEA HSTGRKLFSS  600
HEVKAFLAQR WKEAIASDHV KLVLSPETEL PECVENQDVQ ATAHIPSDSG NRSILGSAEN  660
RLAGTNGPER AKNGNSKHAK FKAKPERGYK LKYIPKQRNS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	290	ERKRLKKL
2	543	550	RRERRKRE
3	546	551	RRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-94	C2H2 family protein