PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM91438.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 682aa MW: 76418.4 Da PI: 9.4069

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM91438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.8e-08	107	127	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lCr+f++ G C++G+ C+F H OWM91438.1 107 ALCRDFSA-GRCRRGSDCPFVH 127 69****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MSDRSRRRSS KWDLKEDRPL SPENIHGRSR ELDKLTAWDG DGGYSTRMSP GLNDWRRHNH 60 GRSPREKWDR PVRNRSRSRS RSRSRSPVRG FRQESGNYDR NRSRSGALCR DFSAGRCRRG 120 SDCPFVHQGN RNYDDNWEDR HRKGGMSKYS TAHDVTEYPS RSSTERQRER NRSNDTLCKF 180 FAAGNCHNGR YCRFSHGKTS ESPERKMDET NRHWEDSRWR VAGHVPDAGK FEDGNGRRGA 240 LDQRVNDQFS EGRRESRFEK ESRTWNDPTA GASSVILPEP RTAEKVLGDV DMSPDWNYRP 300 TTSSHAKDER QHNTYSSPVP TSLLPIHGHD TTWNGSGQMK HSPSVNKDMR FDNPGILQSD 360 LNFTSNVLHG QGFDQNRQNL SLVALPSLNP VGQSNAAIIV DPLRGGPLNQ PNNGIFAEGK 420 LVGDPNIPQV TGVPPNNNSV NGEQLTQLNN LSTSLAQFLE AGKQLPQLYA ALSVPQPPPE 480 DPVDQVKPVL SNVSIAPREQ YEHISDSAEQ KKVDDVDGLK TAADGEQADG SKTGSSNQGP 540 LDSRDAKVSA EEVAEGIKKV DEAKEVRSDD QTENADGVKK DDDGKKSKEA KSVRAFKFAL 600 AEFVKELLKP TWKDGLVGKE AYKTIVKKVV DKVTGSLQVA NFPQSQEKID HYLSVSKPKL 660 TKLVQPVLTF LLVLFLQHAE NL

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MSDRSRRRSS KWDLKEDRPL SPENIHGRSR ELDKLTAWDG DGGYSTRMSP GLNDWRRHNH  60
GRSPREKWDR PVRNRSRSRS RSRSRSPVRG FRQESGNYDR NRSRSGALCR DFSAGRCRRG  120
SDCPFVHQGN RNYDDNWEDR HRKGGMSKYS TAHDVTEYPS RSSTERQRER NRSNDTLCKF  180
FAAGNCHNGR YCRFSHGKTS ESPERKMDET NRHWEDSRWR VAGHVPDAGK FEDGNGRRGA  240
LDQRVNDQFS EGRRESRFEK ESRTWNDPTA GASSVILPEP RTAEKVLGDV DMSPDWNYRP  300
TTSSHAKDER QHNTYSSPVP TSLLPIHGHD TTWNGSGQMK HSPSVNKDMR FDNPGILQSD  360
LNFTSNVLHG QGFDQNRQNL SLVALPSLNP VGQSNAAIIV DPLRGGPLNQ PNNGIFAEGK  420
LVGDPNIPQV TGVPPNNNSV NGEQLTQLNN LSTSLAQFLE AGKQLPQLYA ALSVPQPPPE  480
DPVDQVKPVL SNVSIAPREQ YEHISDSAEQ KKVDDVDGLK TAADGEQADG SKTGSSNQGP  540
LDSRDAKVSA EEVAEGIKKV DEAKEVRSDD QTENADGVKK DDDGKKSKEA KSVRAFKFAL  600
AEFVKELLKP TWKDGLVGKE AYKTIVKKVV DKVTGSLQVA NFPQSQEKID HYLSVSKPKL  660
TKLVQPVLTF LLVLFLQHAE NL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	81	RNRSRSRSR
2	73	83	RNRSRSRSRSR
3	75	83	RNRSRSRSR
4	75	85	RNRSRSRSRSR
5	77	85	RNRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-07	C3H family protein