PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM91278.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB_related

Protein Properties

Length: 464aa MW: 52203.8 Da PI: 10.6122

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM91278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.3e-07	14	46	2	35
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgR 35 grW t+E++ll av ++G+++W+ +a+++ R OWM91278.1 14 GRWGTWEELLLGGAVLRHGTRDWEMVASELR-SR 46 8***************************998.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MDGEAVGVTV SAPGRWGTWE ELLLGGAVLR HGTRDWEMVA SELRSRILCP FDFTPEVCKA 60 KYEDLRHRFS GCSAWFEELR KQRMEELRQA LERSESSIGS LQSKLKTLMA KKEESDQVEY 120 DSSRTVSLEP VQKPNQVESF RRDSLKDGLL SSSSFTQETS MNWSAEEVLE TKPNISESFD 180 QRRDPRIGML GDLYLGQVSG CIRKKRGKRK RKDCGREAKE GSVGESEFVG PIDVVAESRE 240 SKETSTSDNG SAKCDKVDLG RGLRKEGLDD LMRIFSSVVE HKSARVFLQW LDGQKRGRYK 300 KLIRRHIDLE RIKTKLTNHS TTSSMELFRD LLLLANNALV FYAKNTRENK SALLLRHTIN 360 RTISRECNKD STTTEKDSTT TEIISEKTTP KVKSHSSLLN NQKSPPRRGT GRRTRKAGNS 420 RPAPSAGSTA GGKRRTGGTR RGRSGNPGQR SVNTGRGRKR ARSD

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MDGEAVGVTV SAPGRWGTWE ELLLGGAVLR HGTRDWEMVA SELRSRILCP FDFTPEVCKA  60
KYEDLRHRFS GCSAWFEELR KQRMEELRQA LERSESSIGS LQSKLKTLMA KKEESDQVEY  120
DSSRTVSLEP VQKPNQVESF RRDSLKDGLL SSSSFTQETS MNWSAEEVLE TKPNISESFD  180
QRRDPRIGML GDLYLGQVSG CIRKKRGKRK RKDCGREAKE GSVGESEFVG PIDVVAESRE  240
SKETSTSDNG SAKCDKVDLG RGLRKEGLDD LMRIFSSVVE HKSARVFLQW LDGQKRGRYK  300
KLIRRHIDLE RIKTKLTNHS TTSSMELFRD LLLLANNALV FYAKNTRENK SALLLRHTIN  360
RTISRECNKD STTTEKDSTT TEIISEKTTP KVKSHSSLLN NQKSPPRRGT GRRTRKAGNS  420
RPAPSAGSTA GGKRRTGGTR RGRSGNPGQR SVNTGRGRKR ARSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	213	RKKRGKRKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	3e-25	MYB_related family protein