PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM91207.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 659aa MW: 73447 Da PI: 8.0054

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM91207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	167	187	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ff + G+C +G++C+F H+ OWM91207.1 167 ICGFFVK-GWCIRGSSCRFLHV 187 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MIWNSRLQDR RTVNPVDCSW ITSSQQVAFW MIAELPLISK IFSCSNLSWN LEGGKATENR 60 NHGRVQKRTE TPFGGAKAYL HDGKMIKALI SDSCSTQNQE DGLVPLDHSG EKDDGAYYPA 120 KEVKEMGLQS EEDKKQMQSR LAAPEVAPRS LPLGMELTER NKRPAIICGF FVKGWCIRGS 180 SCRFLHVKDN PDSSSKQPVE EKRNERDKGL RDDSEACPPG MLDRLGSSSN QNSSALASSS 240 SSVLPVDPSL PSTDRGDSSK YDDGFISSYR NVIRNGLGRR RYDEDYKIYT SLINRGTSFT 300 LRSNFLADYG HSPNGSVRSL SIHEREVPTS CFPSHSLNSS LNAPPLAFSS LSSNASPLDA 360 QNFLGSEYRS ASLLESSSFS SGSGLERHSL QCGNNKRKFS PYNWEPSVPF RPSFSIASVL 420 PSLGHLYDPF HDSIEQPKAG DGVYRASEQQ ISGQTKGNRV SGCENENSVS SHNQILEQVA 480 DKDCHTHGRD SFAAPAETAE NSIVDCQNED ALPEESSRPL KENSEVDVRN RTGLRKSDQA 540 RLRKDLKDER VRKKVEKSMH HNTNAEEPKE SKLLRHFRFV LIDFVKALLR PRWEGGRLTK 600 DAHNLIVKKA VDKVMGTLSP EQVPTSKHLI KEYLSLSEPR IVKLVEAYVD KYGKPCEAS

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MIWNSRLQDR RTVNPVDCSW ITSSQQVAFW MIAELPLISK IFSCSNLSWN LEGGKATENR  60
NHGRVQKRTE TPFGGAKAYL HDGKMIKALI SDSCSTQNQE DGLVPLDHSG EKDDGAYYPA  120
KEVKEMGLQS EEDKKQMQSR LAAPEVAPRS LPLGMELTER NKRPAIICGF FVKGWCIRGS  180
SCRFLHVKDN PDSSSKQPVE EKRNERDKGL RDDSEACPPG MLDRLGSSSN QNSSALASSS  240
SSVLPVDPSL PSTDRGDSSK YDDGFISSYR NVIRNGLGRR RYDEDYKIYT SLINRGTSFT  300
LRSNFLADYG HSPNGSVRSL SIHEREVPTS CFPSHSLNSS LNAPPLAFSS LSSNASPLDA  360
QNFLGSEYRS ASLLESSSFS SGSGLERHSL QCGNNKRKFS PYNWEPSVPF RPSFSIASVL  420
PSLGHLYDPF HDSIEQPKAG DGVYRASEQQ ISGQTKGNRV SGCENENSVS SHNQILEQVA  480
DKDCHTHGRD SFAAPAETAE NSIVDCQNED ALPEESSRPL KENSEVDVRN RTGLRKSDQA  540
RLRKDLKDER VRKKVEKSMH HNTNAEEPKE SKLLRHFRFV LIDFVKALLR PRWEGGRLTK  600
DAHNLIVKKA VDKVMGTLSP EQVPTSKHLI KEYLSLSEPR IVKLVEAYVD KYGKPCEAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-50	C3H family protein