PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90758.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 426aa MW: 48941.7 Da PI: 6.5492

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90758.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79	6.7e-25	103	197	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v +Li+a+++++e+l +++ +kk++W++vsk+++erg+ +sp+qC++k+++lnkrykk++++ +++ +++++++ +++d OWM90758.1 103 KWTDKMVTLLITAVSYIGEDLASDCgsggrrkfavlQKKGKWKSVSKVLAERGYLVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLD 197 7*******************99888999999999********************************************5588888887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MIPGGPSYGG LDLQRSMQIH HQGPPPHALH HSHSRQTPYE GFPLTMGTLQ SCDQTISVGD 60 FGKGDRCKNS ASDEDDRSLT EDGAGNPNDA NIAKKGSPWQ RVKWTDKMVT LLITAVSYIG 120 EDLASDCGSG GRRKFAVLQK KGKWKSVSKV LAERGYLVSP QQCEDKFNDL NKRYKKLNDM 180 LGRGTSCQVV ENPALLDVID FLTEKEKDDV RKILSSKHLF YEEMCSYHNG NRLHLPHDPE 240 LQRSLQQALR SRDDHESNDS RRNHHDDLDE DEPDLDNDDH DDYEENYPMY GHPTRAHGHG 300 PAKRMKQGLA HEDVTHGASL NNPHECNKGS HSLMQPDMNQ GISDCARATW LQKPRMESRS 360 IQLEEQKLQI QVEMLELEKQ RFKWERFCRK KDRELEKMRV ENEKMKLENE RLALELKRKE 420 MGMDYD

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MIPGGPSYGG LDLQRSMQIH HQGPPPHALH HSHSRQTPYE GFPLTMGTLQ SCDQTISVGD  60
FGKGDRCKNS ASDEDDRSLT EDGAGNPNDA NIAKKGSPWQ RVKWTDKMVT LLITAVSYIG  120
EDLASDCGSG GRRKFAVLQK KGKWKSVSKV LAERGYLVSP QQCEDKFNDL NKRYKKLNDM  180
LGRGTSCQVV ENPALLDVID FLTEKEKDDV RKILSSKHLF YEEMCSYHNG NRLHLPHDPE  240
LQRSLQQALR SRDDHESNDS RRNHHDDLDE DEPDLDNDDH DDYEENYPMY GHPTRAHGHG  300
PAKRMKQGLA HEDVTHGASL NNPHECNKGS HSLMQPDMNQ GISDCARATW LQKPRMESRS  360
IQLEEQKLQI QVEMLELEKQ RFKWERFCRK KDRELEKMRV ENEKMKLENE RLALELKRKE  420
MGMDYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	391	KQRFKWERFCRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-170	Trihelix family protein