PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88850.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SRS

Protein Properties

Length: 354aa MW: 37681.1 Da PI: 7.3605

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.4	1.8e-60	126	282	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96 g++sC dCGnqakkdCah+RCRtCCksrgf+C thvkstWv+aakrrer+qq+ a +++ + a+s l+ k+ + ++ a++ OWM88850.1 126 RGGVSCLDCGNQAKKDCAHTRCRTCCKSRGFHCPTHVKSTWVSAAKRRERHQQHFGALKHEHDPLhfrhgSGASSSGAGLLEPPKRVRENPSSGLLATT 224 5789********************************************7777666555544444555422222222222334444444444455666 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + le ++P+e+ s+a+frcvrvs dd +e++aYqtav+igGhvf+GiLyd+G+e+ OWM88850.1 225 SAGLELGNFPAELTSTALFRCVRVSPTDDPQEHYAYQTAVTIGGHVFRGILYDRGPES 282 77899999**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MAGFFSLGGG GGCGGRPPSS DHTHRRPEDD DNPTPNPTET WFWPYGSRAA AAAAAQSHQQ 60 HEHEHEQWIQ QQQGEGEGGF VTVRQEAAHQ QQHHQVGWGP GPGPSSRPSW MNASDESSSR 120 STGSARGGVS CLDCGNQAKK DCAHTRCRTC CKSRGFHCPT HVKSTWVSAA KRRERHQQHF 180 GALKHEHDPL HFRHGSGASS SGAGLLEPPK RVRENPSSGL LATTSAGLEL GNFPAELTST 240 ALFRCVRVSP TDDPQEHYAY QTAVTIGGHV FRGILYDRGP ESTYVGGGES SSGGGSGSGV 300 AAQPHNLVTV AATAAENSGM PPSATALYDP NSSIYTAAPL NPYMGTQFFP HQRS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MAGFFSLGGG GGCGGRPPSS DHTHRRPEDD DNPTPNPTET WFWPYGSRAA AAAAAQSHQQ  60
HEHEHEQWIQ QQQGEGEGGF VTVRQEAAHQ QQHHQVGWGP GPGPSSRPSW MNASDESSSR  120
STGSARGGVS CLDCGNQAKK DCAHTRCRTC CKSRGFHCPT HVKSTWVSAA KRRERHQQHF  180
GALKHEHDPL HFRHGSGASS SGAGLLEPPK RVRENPSSGL LATTSAGLEL GNFPAELTST  240
ALFRCVRVSP TDDPQEHYAY QTAVTIGGHV FRGILYDRGP ESTYVGGGES SSGGGSGSGV  300
AAQPHNLVTV AATAAENSGM PPSATALYDP NSSIYTAAPL NPYMGTQFFP HQRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	6e-56	SRS family protein