PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88402.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 334aa MW: 38391.3 Da PI: 10.3424

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.9e-05	136	159	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L++H r H OWM88402.1 136 YLCRVCGRKFYTNEKLVNHFRQiH 159 56*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MLLKARKILS FPRHGNCFNL NSRIGIADFT RPCYYTRGSC YSSSEPRSAS TQKPNRANVA 60 VFWDLDNKPP NSFPPFEAAT KLKAASSSFG YVRHMVAYAN SHSFSYVPPV VREQRKERKL 120 LDKLENKGVI KPSEPYLCRV CGRKFYTNEK LVNHFRQIHE SEHKKRLSQI ESARGKRRVN 180 LVAKYAMKME KYKNAARDIL TPRVGCGLAD ELKRAGFWVQ TVSDRPEAAD IALRNHMIDM 240 MDRRRADCLV LVSDDSDFVG VIKEARERCL KTVVVGDISD GALKRTADVG FSWKEILMGK 300 AKKEAVSVMG RWKDREILKR LEWTYDPEAE RKKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-147	C2H2 family protein