PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM85313.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 629aa MW: 70248.7 Da PI: 5.142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM85313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	433	466	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i ++f L++++P+ +K++ ++ L +++Y+k+L OWM85313.1 433 ISERFYALKSIIPSI-----GKVDQVTLLDDTIDYLKDL 466 88999*******8.....7**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MAQNNQGRMP ENLRKQLSLA VRSIQWSYAI FWSISATQPG VLEWGDGYYN GDIKTRKTIQ 60 AVEIKADELG LQRSKQLREL YDSLAAGESS PQSKRPSTSL SPEDLSDTEW YYLVCMSFVF 120 DIGEGLPGRT LATGQPIWLC NAPYADSKAF SRSLLAKTIV CFPFSGGVIE LGTTELVVED 180 LSLIQHVESS FLEMPYSIIG ATNADRGIGD KRSEEGLDFD TVFGTKLIPV IGELDVTSPN 240 ISSSGFDPGH LPEDPFLIEG TNGMASQVQS WQFVDDEFSN GGAHCSMNSS DCISQTLVEP 300 VKVVSVLKGE KINDHCDPED VGPVEPRSDD LHYQNVLSSL LKSHQQLMLG PRFRRGRQES 360 SFSSWKKEGI LNLQKPSRTP QRILKKILFE VPRKHGFLNC PEENAKKNGV SRPESDQIGP 420 THVLSERTEG ELISERFYAL KSIIPSIGKV DQVTLLDDTI DYLKDLKRRV EELESVREEP 480 IGLVPKSRKK SQEAFERTSD NCDHIKSGFS KRPPGGKRKV RDADEMGELE IEQREGSIDN 540 NLTVRIKGKG VEMEIRCDWR EGVLLEIMEA LSDLRLDSQS VQSSNVDGVL SLKINCKVLP 600 ISKCFIVCFV RVLFSWKNYL NFPVCGLSP

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MAQNNQGRMP ENLRKQLSLA VRSIQWSYAI FWSISATQPG VLEWGDGYYN GDIKTRKTIQ  60
AVEIKADELG LQRSKQLREL YDSLAAGESS PQSKRPSTSL SPEDLSDTEW YYLVCMSFVF  120
DIGEGLPGRT LATGQPIWLC NAPYADSKAF SRSLLAKTIV CFPFSGGVIE LGTTELVVED  180
LSLIQHVESS FLEMPYSIIG ATNADRGIGD KRSEEGLDFD TVFGTKLIPV IGELDVTSPN  240
ISSSGFDPGH LPEDPFLIEG TNGMASQVQS WQFVDDEFSN GGAHCSMNSS DCISQTLVEP  300
VKVVSVLKGE KINDHCDPED VGPVEPRSDD LHYQNVLSSL LKSHQQLMLG PRFRRGRQES  360
SFSSWKKEGI LNLQKPSRTP QRILKKILFE VPRKHGFLNC PEENAKKNGV SRPESDQIGP  420
THVLSERTEG ELISERFYAL KSIIPSIGKV DQVTLLDDTI DYLKDLKRRV EELESVREEP  480
IGLVPKSRKK SQEAFERTSD NCDHIKSGFS KRPPGGKRKV RDADEMGELE IEQREGSIDN  540
NLTVRIKGKG VEMEIRCDWR EGVLLEIMEA LSDLRLDSQS VQSSNVDGVL SLKINCKVLP  600
ISKCFIVCFV RVLFSWKNYL NFPVCGLSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	463	469	LKDLKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-174	bHLH family protein