PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM83837.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 378aa MW: 43518.1 Da PI: 9.1693

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM83837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	19	42	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C +Cg + s ks+ ++Hi + H OWM83837.1 19 YNCDYCGICRSKKSLITSHILSsH 42 89******************9988 PP
2	zf-C2H2	20.7	1.1e-06	68	89	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +L++H+++H OWM83837.1 68 TCEECGATFKKPAYLRQHMQSH 89 6*******************99 PP
3	zf-C2H2	16.8	2e-05	95	119	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dC+ s++rk++L rH+ H OWM83837.1 95 FQCSveDCHASYRRKDHLARHLLQH 119 89*******************9887 PP
4	zf-C2H2	19.9	2e-06	124	149	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C++sF + n+krH++ H OWM83837.1 124 FTCPldGCNRSFAYQGNMKRHLKEmH 149 89*********************988 PP
5	zf-C2H2	17.1	1.6e-05	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y Cp Cgk+F+ s L++H +H OWM83837.1 166 YACPepGCGKVFRFASRLRKHEDSH 190 88*******************9888 PP
6	zf-C2H2	19.2	3.4e-06	257	281	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs++snL+ H + H OWM83837.1 257 KCHfpDCQHTFSTQSNLRIHVKAvH 281 7*******************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MAEDVGERVG SIFRDIRRYN CDYCGICRSK KSLITSHILS SHKDEVEKEK KEPAESVENT 60 EGKKSKNTCE ECGATFKKPA YLRQHMQSHS LERPFQCSVE DCHASYRRKD HLARHLLQHE 120 GKLFTCPLDG CNRSFAYQGN MKRHLKEMHD NESPSTSSGC PSPKQYACPE PGCGKVFRFA 180 SRLRKHEDSH VKLEMTEAFC CECMKSFSTV DCLKAHILSC HQHTICEICG TKQLRKNMKR 240 HLRLHKAKPS PNSKVIKCHF PDCQHTFSTQ SNLRIHVKAV HLNLKPFVCC YKECGKRFSY 300 KHVRDNHEKT GCHVYTPGDF AELDEQFQSR PRGGRKRKCP TIESLLRKRL HPSIKVAKVV 360 DDLIRMVVGL NEAFIARI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MAEDVGERVG SIFRDIRRYN CDYCGICRSK KSLITSHILS SHKDEVEKEK KEPAESVENT  60
EGKKSKNTCE ECGATFKKPA YLRQHMQSHS LERPFQCSVE DCHASYRRKD HLARHLLQHE  120
GKLFTCPLDG CNRSFAYQGN MKRHLKEMHD NESPSTSSGC PSPKQYACPE PGCGKVFRFA  180
SRLRKHEDSH VKLEMTEAFC CECMKSFSTV DCLKAHILSC HQHTICEICG TKQLRKNMKR  240
HLRLHKAKPS PNSKVIKCHF PDCQHTFSTQ SNLRIHVKAV HLNLKPFVCC YKECGKRFSY  300
KHVRDNHEKT GCHVYTPGDF AELDEQFQSR PRGGRKRKCP TIESLLRKRL HPSIKVAKVV  360
DDLIRMVVGL NEAFIARI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	338	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-127	C2H2 family protein