PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM82368.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 358aa    MW: 40611.7 Da    PI: 6.2231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM82368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0691114226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC f+ + G+C  G +CkF+H+
  OWM82368.1  91 KSILCEFYKA-GQCAKGFKCKFSHD 114
                 6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MPPKQASKKA DLAKKQKIVE DKTFGLKNKN KSKNVQKYVQ NLQQTVQPKP DPSKVAAKKK  60
KDEGKAKENE LNDLFKVAVS QPKVPVGVDP KSILCEFYKA GQCAKGFKCK FSHDLNVQRK  120
GEKIDIYSDK RDQGTMEDWD QRTLEKVVES KNEEYKQNKP TDIVCKYFLE AVEKKQYGWF  180
WVCPNGGKDC HYRHALPPGF VLKSQMKALI EEESEKTPLE EEIENQRANI KTSTPLTPEL  240
FMKWKKKKMA ERDANLDALR AERAKNDRMS GRELFLSDSS VFVDDVEAYE KYLREEEFHK  300
NMGDGSSSGE GPSAPATDAG DSEGPLEEDG DDLDINELNE LEESLSKSVK INESGTNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-147C3H family protein