PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80596.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 350aa MW: 38686.4 Da PI: 8.2575

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl OWM80596.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+l+ + G++ W+ Ia+ ++ gRt++++k++w++ OWM80596.1 69 GGFSEEEDDLICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDDLIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEYGRRGN NSSLKRREKK KGSIAGEENS MEYPSSFSSN QGTPYWPELP AATPTTMMPY 180 SNLEGASFND HTSMRKLLIK LGGRFSDHND QVAMIQAGAS SLHQYSNGQS SSSPSQNPNY 240 DHDQSMAMLS SATIIQPQFG VVEGGITTPS ALVEETQRFG DPQRLDGLEF LLGDGIETAC 300 AEGPSVNWND MSSVIYPNSV NVASGYGLGI QQSPLQECSF SNELRYSVVQ

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDDLIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEYGRRGN NSSLKRREKK KGSIAGEENS MEYPSSFSSN QGTPYWPELP AATPTTMMPY  180
SNLEGASFND HTSMRKLLIK LGGRFSDHND QVAMIQAGAS SLHQYSNGQS SSSPSQNPNY  240
DHDQSMAMLS SATIIQPQFG VVEGGITTPS ALVEETQRFG DPQRLDGLEF LLGDGIETAC  300
AEGPSVNWND MSSVIYPNSV NVASGYGLGI QQSPLQECSF SNELRYSVVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	7e-83	MYB family protein