PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80499.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 311aa MW: 33767.1 Da PI: 9.7822

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	83	102	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +Cp Cgk F ++ L H+r OWM80499.1 83 ECPECGKKFWSWKALFGHMR 102 5******************8 PP
2	zf-C2H2	15.1	6.4e-05	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F+++ L H tH OWM80499.1 202 YECESCKKVFRTRQALGGHRATH 224 99**************9999998 PP
3	zf-C2H2	16.2	2.9e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C ++Fs+ L H+r+H OWM80499.1 266 YRCGICLRTFSSGQALGGHMRSH 288 9*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MNYNGSQFGL SPSPSQQIPG SFFASSLLLG PCSFLTPKNQ TQNTRGRRSG PLRTDLTLRP 60 PCNVARRKRL HDPEPGEPKV ARECPECGKK FWSWKALFGH MRCHPERQWR GINPPSSSLK 120 QPGSPLHSRP ATMLAGEATT AEEREVAESL RMLAGDDCAS PSASGSSFTF TANNQRISTS 180 GSALAVVAEN DSTYPSGSSF QYECESCKKV FRTRQALGGH RATHKNVKGC SALSRSGATA 240 ADGSKISADC IEGKRVFLPE NHRHHYRCGI CLRTFSSGQA LGGHMRSHFE AKGPPGLEVE 300 PRLTLDLKLG L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	3e-47	C2H2 family protein