PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79881.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB_related
Protein Properties Length: 278aa    MW: 30607.1 Da    PI: 9.3353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++W +eE+e l+ +++++G+g Wk I r         +R+  ++k++w+++
       OWM79881.1  5 KLKWMAEEEEALLAGIAKYGPGKWKNILRDPEfapslVNRSNIDLKDKWRNL 56
                     689***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGNQKLKWMA EEEEALLAGI AKYGPGKWKN ILRDPEFAPS LVNRSNIDLK DKWRNLSVSG  60
PGSKEKLRLP KGKALPALQN SVAPASAAPA VLADNTTTDA VIDDPSNSLH DSKNACRYNE  120
LIFETLSTIT DSNGADIGTI LSYIEERLEV PPNFRRLLGS RLRRLVLQGK LEKVQNNYRV  180
NRDVTVGTNP PTPKQKDVKP RPIQAPSVLP SHETMQEAAM AAAYKVAEAE NKAFLASEAV  240
KEAERVSKMA DDTDAMLQLV KEICEQCKVL PLKPRRAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-56MYB_related family protein