PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79819.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 494aa MW: 54656.9 Da PI: 6.7208

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ r g+ R++k+c++rw ++l OWM79819.1 33 KGPWTSAEDAILIEYVKKHGEGNWNSVQRNTGLMRCGKSCRLRWANHL 80 79******************************************9986 PP
2	Myb_DNA-binding	50.2	6.1e-16	86	129	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++G++ W++ a+ ++ gRt++++k++w++ OWM79819.1 86 KGAFTAEEERTIIQLHAKYGNK-WARMASLLP-GRTDNEIKNYWNT 129 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MARNNRDEGA AAVEGAREPV MVGGNQGGQG LKKGPWTSAE DAILIEYVKK HGEGNWNSVQ 60 RNTGLMRCGK SCRLRWANHL RPNLKKGAFT AEEERTIIQL HAKYGNKWAR MASLLPGRTD 120 NEIKNYWNTR IKRRLRANLP LYPEGIRRAE LLHQRRHQLL HHQHYLTSSS LLQPQQVLPN 180 PQGRYGFNPS HHSFHQAGFT MPSINVLSST QQPYMVHSDP NHLNEFLLNN LNGNFSVPIP 240 SPSSFFDQSI PAHLLQNPNS LPVNSLGIFN DDLTSLTAML MGAPVEDSGN KLSTNKKLSS 300 GKNQSTGPTA LAPSSSSPNS DDCLIGAHSN NSDEYNDIKR EQPLANRNSG LLDSLLEEAK 360 VLTSQKNFKD EDSSYTADGA NGKQTVEDTP DEFCIGPEDL EEIMKMDNPF YSMDEELSSL 420 LMNFPSAMPK PEWYLSGSNN DATGQSSSRA KENSSASLDV CNADDATPPR VMATSSESDW 480 SLKASCWKNM PGIH

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MARNNRDEGA AAVEGAREPV MVGGNQGGQG LKKGPWTSAE DAILIEYVKK HGEGNWNSVQ  60
RNTGLMRCGK SCRLRWANHL RPNLKKGAFT AEEERTIIQL HAKYGNKWAR MASLLPGRTD  120
NEIKNYWNTR IKRRLRANLP LYPEGIRRAE LLHQRRHQLL HHQHYLTSSS LLQPQQVLPN  180
PQGRYGFNPS HHSFHQAGFT MPSINVLSST QQPYMVHSDP NHLNEFLLNN LNGNFSVPIP  240
SPSSFFDQSI PAHLLQNPNS LPVNSLGIFN DDLTSLTAML MGAPVEDSGN KLSTNKKLSS  300
GKNQSTGPTA LAPSSSSPNS DDCLIGAHSN NSDEYNDIKR EQPLANRNSG LLDSLLEEAK  360
VLTSQKNFKD EDSSYTADGA NGKQTVEDTP DEFCIGPEDL EEIMKMDNPF YSMDEELSSL  420
LMNFPSAMPK PEWYLSGSNN DATGQSSSRA KENSSASLDV CNADDATPPR VMATSSESDW  480
SLKASCWKNM PGIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	RIKRRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	8e-63	MYB family protein