PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78478.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-YC

Protein Properties

Length: 288aa MW: 31611.9 Da PI: 5.4482

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.8	1.4e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl div r OWM78478.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSVHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSSVHLKHC VQSYNVFDFL RDIVSRVPDY GHGHGHADAA SDDRTVSRRR KAVGDDGNET 120 DEETKKSRML QVGHGSTSGR GRGRGRGRGR GRGARHVERE ILHQEMEPEP AASLQPASVN 180 KDSSLGAHED RASDSKELVK ETAVPTNGTN PGARNFDLNA QVAENEGVAT AAAPAENPPQ 240 EGPNTEAKHE DYLGWPLSEV DKMAIDPLQL ANLGNRIDED EEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	149	RGRGRGRGRG
2	140	150	RGRGRGRGRGR
3	142	151	RGRGRGRGRG
4	142	152	RGRGRGRGRGR
5	144	153	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-86	NF-YC family protein