PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78457.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 351aa MW: 38167.4 Da PI: 10.3152

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.5e-15	50	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v++++ ++ +++++qCk+k+e+++kry+ + + s++p++++l+ OWM78457.1 50 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARFVssraNCTKSHKTQTQCKNKIESMKKRYRSESAAPDP------SSWPLYQRLD 133 5***********************************98777888999***************99888775......5699999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEKDTSTTPA AHHQHNPSLL PKEESPRRSP ALISGAGGSS GGGDRLKRDE WSEGAVSTLL 60 EAYEAKWVLR NRAKLKGHDW EDVARFVSSR ANCTKSHKTQ TQCKNKIESM KKRYRSESAA 120 PDPSSWPLYQ RLDMLLRGNA ATLPPPQQPP ASQLPIINPT FALLEPPPPP PPAPPPPPPA 180 PAAAPAPVPP PGVAQNSLGS NGVDRVAAKE DGAGTKVSDQ VSDKNPIETD SSTPALYSHE 240 NQGLKSKKLK MMKRKKKKMV AAGGRKKGSS EEWEIADSIR WLAEAIVRSE QSRMETMKEV 300 ERMRIEAETK RGEMDLKRTE IIANTQLEIA RLLAGGGSGK GIDSSLRIGR N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEKDTSTTPA AHHQHNPSLL PKEESPRRSP ALISGAGGSS GGGDRLKRDE WSEGAVSTLL  60
EAYEAKWVLR NRAKLKGHDW EDVARFVSSR ANCTKSHKTQ TQCKNKIESM KKRYRSESAA  120
PDPSSWPLYQ RLDMLLRGNA ATLPPPQQPP ASQLPIINPT FALLEPPPPP PPAPPPPPPA  180
PAAAPAPVPP PGVAQNSLGS NGVDRVAAKE DGAGTKVSDQ VSDKNPIETD SSTPALYSHE  240
NQGLKSKKLK MMKRKKKKMV AAGGRKKGSS EEWEIADSIR WLAEAIVRSE QSRMETMKEV  300
ERMRIEAETK RGEMDLKRTE IIANTQLEIA RLLAGGGSGK GIDSSLRIGR N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	258	KKLKMMKRKKKK
2	254	267	RKKKKMVAAGGRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-91	Trihelix family protein