PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM77522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19918.4 Da PI: 8.2107 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.9 | 7.2e-20 | 2 | 50 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie++ r vtfskRr gi KKA+EL +C++ev v++fs+tgk y + OWM77522.1 2 KRIEDDDDRMVTFSKRRSGIYKKASELVAMCGVEVGVVVFSPTGKPYSF 50 79*******************************************8887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MKRIEDDDDR MVTFSKRRSG IYKKASELVA MCGVEVGVVV FSPTGKPYSF GHPSVRAVLN 60 KFLNRNAPPP TDNRLQPFID ANIRMRRDGY NDYVNQLLAR LDDAKERGKD LSRITRATSE 120 GNSSNWARRW WEKSPEERSF DELKEEALFL EALHRDICNY LNHPVDLNAL GSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-23 | M-type_MADS family protein |