PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM73698.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 279aa    MW: 32554.2 Da    PI: 9.3515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM73698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-091841225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                ++++C+f+++ G+C++GdrC++ H
  OWM73698.1 18 DRVNCPFYFKIGECRHGDRCSRLH 41
                6899*******************9 PP
2zf-CCCH18.43.8e-06138160326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +  Cr + +   C++G+ C+F+H 
  OWM73698.1 138 ETTCRQYEE-NNCNRGGYCNFMHL 160
                 678**9999.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MKAATAEHLA SIFGTEKDRV NCPFYFKIGE CRHGDRCSRL HTRPSIGPTL LLSNMYQRPD  60
MITPGIDANG QPIDPLQNPG AISSKYGDIE SLNVCDNLAD HMVVILTYNS ERKNKLPMHF  120
GAWHSIIVEF SPVTDFRETT CRQYEENNCN RGGYCNFMHL KRISRELRRQ LFGRYWGRRS  180
RSRSRSRSPI RHRSHEDHGW RSPARRRDRS PVSEGSEERR ASIEQWNRER AQRNNANRVY  240
SESLNKDNME DDKGYERVGD HCAYEGQQQQ RPRDGVYGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187RSRSRSRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.12e-28C3H family protein