PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G44785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 75aa MW: 8742.11 Da PI: 10.0505 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.6e-09 | 14 | 35 | 2 | 23 |
-S---SGGGGTS--TTTTT-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkF 23 ++++C+f+++ G C+ GdrC++ AT3G44785.1 14 DRVNCPFYFKIGVCRNGDRCSR 35 689*****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.958 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 14 | 35 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 6.2E-14 | 18 | 37 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 6.2E-14 | 37 | 57 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MVEHLASIYG TEKDRVNCPF YFKIGVCRNG DRCSRLYTKP SISPTLLLSN TYQQGRLKQF 60 LDPVQSREKD PKKKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 4e-19 | 1 | 53 | 1 | 53 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G44785 | |||||
AtGenExpress | AT3G44785 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G44785.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G44785 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002534 | 1e-124 | AC002534.1 Arabidopsis thaliana BAC T32N15 from chromosome III near 54 cM, complete sequence. | |||
GenBank | CP002686 | 1e-124 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_974385.1 | 2e-50 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q9S709 | 2e-27 | U2AFA_ARATH; Splicing factor U2af small subunit A | ||||
TrEMBL | Q3EAP8 | 4e-49 | Q3EAP8_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | AT3G44785.1 | 7e-50 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21123 | 4 | 4 | Representative plant | OGRP1576 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | AT3G44785.1 |
Entrez Gene | 2745945 |
iHOP | AT3G44785 |
wikigenes | AT3G44785 |
Publications ? help Back to Top | |||
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