PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72256.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 764aa MW: 82978.3 Da PI: 4.8949

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.2	6e-30	99	183	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k+yk++keg+ +r+++ + +++f++lea OWM72256.1 99 RWPRQETLALLRIRSEMDAAFRDASVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVDKYYKRTKEGRAGRQDG--KAYKFFSELEA 183 8*******************************************************************8555..56****985 PP
2	trihelix	107.6	8.1e-34	495	580	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a OWM72256.1 495 RWPKTEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMQRMGYRRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 580 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MQQGRGSHSH QYTHMGGASA SASASASAAA DQSQHSSQMV VEEASPISSR PPASTGNLDE 60 FMPGSSGGAG GYSDMDALAT AAAAGDDADR GGGGGGGNRW PRQETLALLR IRSEMDAAFR 120 DASVKGPLWE DVSRKLAELG YKRSAKKCKE KFENVDKYYK RTKEGRAGRQ DGKAYKFFSE 180 LEALHNTSVA SQLPPPPMAA TTAATATSFP PGIGFSSPMP ISSVRPLHPT TSISPVPGQP 240 QTSHPFLTAE GGARPFAASP MGPDFSSDSS SSSPETEDDE DDIEGSDLEG EPSNVAGSSR 300 KRKRGGGSSR RMMEFFEGLM RQVMQKQEAM QQRFLEAIEK REQDRLVREE AWRRQEMTRL 360 AREHEIMAQE RAVSASRDAS IMAFLQKVTG QTIQLPTTSP AAIAITSITP TQPSMVPMPQ 420 PVHVPMPSQQ PLPSYQQQQK SQQPSDRPRQ AQSVNVEAAR HQPVISTDVV LAAVPEQQVR 480 VQDSGGRSSE PPSSRWPKTE VLALIKLRSG LESRYQEAGP KGPLWEEISA GMQRMGYRRS 540 AKRCKEKWEN INKYFKKVKE SNKKRPEDAK TCPYFHELDA LYQKKIFGGS SSGSIGGTSV 600 EGAGNGAQQV QHQLDAPVSG QELQPTGQTA EPDQPKDGGS SGQAAGNIEE AKEPEDTVKE 660 SIGRNDHQHS LNLQQQHVEL FAGQREVGRS EDIMEEEEEE EEEDDEEEEE EEEEENENEE 720 SEEESKLAYK IEFQQGSRQN AAGPPSGGGS GAAPAATSFM AMVQ

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MQQGRGSHSH QYTHMGGASA SASASASAAA DQSQHSSQMV VEEASPISSR PPASTGNLDE  60
FMPGSSGGAG GYSDMDALAT AAAAGDDADR GGGGGGGNRW PRQETLALLR IRSEMDAAFR  120
DASVKGPLWE DVSRKLAELG YKRSAKKCKE KFENVDKYYK RTKEGRAGRQ DGKAYKFFSE  180
LEALHNTSVA SQLPPPPMAA TTAATATSFP PGIGFSSPMP ISSVRPLHPT TSISPVPGQP  240
QTSHPFLTAE GGARPFAASP MGPDFSSDSS SSSPETEDDE DDIEGSDLEG EPSNVAGSSR  300
KRKRGGGSSR RMMEFFEGLM RQVMQKQEAM QQRFLEAIEK REQDRLVREE AWRRQEMTRL  360
AREHEIMAQE RAVSASRDAS IMAFLQKVTG QTIQLPTTSP AAIAITSITP TQPSMVPMPQ  420
PVHVPMPSQQ PLPSYQQQQK SQQPSDRPRQ AQSVNVEAAR HQPVISTDVV LAAVPEQQVR  480
VQDSGGRSSE PPSSRWPKTE VLALIKLRSG LESRYQEAGP KGPLWEEISA GMQRMGYRRS  540
AKRCKEKWEN INKYFKKVKE SNKKRPEDAK TCPYFHELDA LYQKKIFGGS SSGSIGGTSV  600
EGAGNGAQQV QHQLDAPVSG QELQPTGQTA EPDQPKDGGS SGQAAGNIEE AKEPEDTVKE  660
SIGRNDHQHS LNLQQQHVEL FAGQREVGRS EDIMEEEEEE EEEDDEEEEE EEEEENENEE  720
SEEESKLAYK IEFQQGSRQN AAGPPSGGGS GAAPAATSFM AMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-49	Trihelix family protein