PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69106.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 485aa MW: 52932.2 Da PI: 7.9528

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.4e-05	120	140	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+++F++ +L H+r H OWM69106.1 120 CRICNRTFPSVKSLFGHMRFH 140 *******************99 PP
2	zf-C2H2	11.1	0.0012	313	335	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F++ L H ++H OWM69106.1 313 FQCTTCGRIFPTFQALGGHRSSH 335 89***********9999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MREFDSPGED SSSPDNTPNK DPLRFKFKLS KAEEESSSSQ SPGTRTCEFC GREFANGKAL 60 GGHIRIHTQA MKNNNAGVSR TTDRLKQKSN LRPNTNNGKD AAAVLWGPER SENWEKEQIC 120 RICNRTFPSV KSLFGHMRFH PERTYRGAQP PSSEEQSKTS YSTSEESDQE IELTKRCSLD 180 REVSGRRDLL KDLPNWSRTD KRGRQSTSEA AQSLMRLSCV ASYIESDEFP PGFNGQKFVP 240 ESPQKKSKLD DGADTEARRG KCVQVQAQPA SLTGREFSQM RARPSKELYL NTGEEEANCR 300 ETGPTQNQKR VRFQCTTCGR IFPTFQALGG HRSSHNKEKG TIASASHNRQ TRLNSPCPVL 360 EASASTEIAG AAPAAASNRV NKEEKGGDPS TATAVHQCGI CGRSFETGQA LGGHKRCHWP 420 AVELGQLASG EGSGQGDNTG QLSLGPKDES SPGDQASQVG PRGLEIDLNK PPPTEDEDGS 480 VSALN

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MREFDSPGED SSSPDNTPNK DPLRFKFKLS KAEEESSSSQ SPGTRTCEFC GREFANGKAL  60
GGHIRIHTQA MKNNNAGVSR TTDRLKQKSN LRPNTNNGKD AAAVLWGPER SENWEKEQIC  120
RICNRTFPSV KSLFGHMRFH PERTYRGAQP PSSEEQSKTS YSTSEESDQE IELTKRCSLD  180
REVSGRRDLL KDLPNWSRTD KRGRQSTSEA AQSLMRLSCV ASYIESDEFP PGFNGQKFVP  240
ESPQKKSKLD DGADTEARRG KCVQVQAQPA SLTGREFSQM RARPSKELYL NTGEEEANCR  300
ETGPTQNQKR VRFQCTTCGR IFPTFQALGG HRSSHNKEKG TIASASHNRQ TRLNSPCPVL  360
EASASTEIAG AAPAAASNRV NKEEKGGDPS TATAVHQCGI CGRSFETGQA LGGHKRCHWP  420
AVELGQLASG EGSGQGDNTG QLSLGPKDES SPGDQASQVG PRGLEIDLNK PPPTEDEDGS  480
VSALN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-36	C2H2 family protein