PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68558.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 303aa    MW: 32264 Da    PI: 4.2682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72e-202266145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie+k  r+vtfskRr g++ KA+ELS LC+ae+a+i +s++g+
  OWM68558.1 22 KKIEDKFAREVTFSKRRGGLFRKASELSMLCGAEIAIIAYSPHGN 66
                68****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MSAAGDGGGR RPPTGKRKRE LKKIEDKFAR EVTFSKRRGG LFRKASELSM LCGAEIAIIA  60
YSPHGNPFAF GSPSAASVLG RFCGSACSSE DAGPGAVPID QKQLSEYGRQ DREALSRLDA  120
ARKRQEAIRD GKAWRWWEEP LGEDLGAEEL EDYIKSVETL MEKVDQRLEV MRGAATAPTP  180
SEGSCGSTVV DPCSDMLEMG RATAAPPATS PTPSEASWSS TVVDPCSGML EMGRATAGPP  240
AAEISSGDGG NVVVDPSLLD MIEGEGQGEE ELFVGGEYDF ESLSSLLELD YDIGSMPLWD  300
VGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-20M-type_MADS family protein