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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OWM68420.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 334aa MW: 36765.3 Da PI: 10.5866 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 43.2 | 1e-13 | 79 | 168 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ + +Li a e+ +l+rg+lk+++W+ev++ + +++ r+ +qCk +++ ++++yk++k+ + s++++f+ ++
OWM68420.1 79 CWSEGSTGVLIGAWGERYLELNRGNLKEKHWKEVAEIVscagggARTRPPRTHVQCKYRIDTVKRKYKQEKAKVAAG--HGPSKWAFFETMD 168
7**************************************9999999999************************9998..45567*******8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 334 aa Download sequence |
MEEDDEIHSH QSGSPSPPSG TAGNGRIADD FAGATSPSSQ QQPPPPQQQQ SSLTLALPIQ 60 QLRAPTAAPA GGGGGREDCW SEGSTGVLIG AWGERYLELN RGNLKEKHWK EVAEIVSCAG 120 GGARTRPPRT HVQCKYRIDT VKRKYKQEKA KVAAGHGPSK WAFFETMDRI IGPAQAHNAP 180 RTGPNKARRQ QPPALLDVAP TISRPPQQPL RAGPGSDSDT ESDKSAEFLR KTTHPQHHPP 240 RLPVVARTDR KRGWEEGEGK GEGVYERAEM GKMRQAVEME KQRLRFAKEA ELERMQLLMA 300 AQVEITKMGR RRRRRRRDVH EKRGGGSGGG CNRN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 310 | 315 | RRRRRR |
| 2 | 310 | 316 | RRRRRRR |
| 3 | 310 | 317 | RRRRRRRR |
| 4 | 310 | 318 | RRRRRRRRD |
| 5 | 311 | 316 | RRRRRR |
| 6 | 311 | 317 | RRRRRRR |
| 7 | 311 | 318 | RRRRRRRR |
| 8 | 311 | 319 | RRRRRRRRD |
| 9 | 312 | 317 | RRRRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G14180.1 | 1e-39 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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