PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM67976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 267aa MW: 29212.4 Da PI: 8.0967 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.1 | 1.4e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC+++p++ +++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ +q++++ OWM67976.1 2 SCNGCRVLRKGCSDDCPIRPCLqwiksADAQANATMFLAKFYGRAGLLNLINAGPDHLRPAIFRSLLYEACGRIINPIYGSVGLLWSGNWAQCQSAVDS 100 6*********************9998666889**************************************************************99987 PP DUF260 95 all 97 +l OWM67976.1 101 VLK 103 765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence |
MSCNGCRVLR KGCSDDCPIR PCLQWIKSAD AQANATMFLA KFYGRAGLLN LINAGPDHLR 60 PAIFRSLLYE ACGRIINPIY GSVGLLWSGN WAQCQSAVDS VLKGTSQFMQ IPSSDILGGT 120 AELAVRALKC SCDIRHIKKS ASSVSQDLRK AHHRTQYKRI KLDSELDVPK PSLWICPAPI 180 YEETSHRENV STEDESNFSA ETIEDSLVAM VAKGTKSEQI WKFSGPTVEK MPAANRESTL 240 GLELTLGLNL RGVHGQVGTS IEQFSGP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-68 | LBD family protein |