PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G68510.1 | ||||||||
Common Name | ASL36, LBD42, T26J14.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25542.7 Da PI: 7.7704 | ||||||||
Description | LOB domain-containing protein 42 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.8e-29 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++dC+++p++ +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++ +q++++ AT1G68510.1 4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVD 101 6*********************9999767889***************************************************************999 PP DUF260 94 lal 96 ++l AT1G68510.1 102 AVL 104 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.85 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH 60 LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DAVLNGLPIT HTPLPSASAS 120 HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM 180 WQLPSSSATH GYGHFTLENV ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27200 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145337288 | 0.0 | ||||
Genevisible | 260265_at | 0.0 | ||||
Expression Atlas | AT1G68510 | - | ||||
AtGenExpress | AT1G68510 | - | ||||
ATTED-II | AT1G68510 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G68510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G68510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473869 | 0.0 | AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds. | |||
GenBank | AF447896 | 0.0 | AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177018.1 | 1e-176 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 1e-177 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A178W6D5 | 1e-174 | A0A178W6D5_ARATH; LBD42 | ||||
STRING | AT1G68510.1 | 1e-175 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 | Representative plant | OGRP403 | 16 | 99 |
Link Out ? help Back to Top | |
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Phytozome | AT1G68510.1 |
Entrez Gene | 843180 |
iHOP | AT1G68510 |
wikigenes | AT1G68510 |
Publications ? help Back to Top | |||
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