PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67949.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

AP2

Protein Properties

Length: 495aa MW: 53647.5 Da PI: 7.583

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	146	195	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OWM67949.1 146 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 195 78*****************......55**********************997 PP
2	AP2	40.9	5e-13	238	288	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ + +g OWM67949.1 238 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIRCNG 288 89******.7**5553..2.26******99********98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MLDLNLNVLS VAESAHEESS AVLLERLSEG SAIQMDESGT SNSSVVNADA GDDDSSSTRA 60 TSGGADACTL SFGILKVHGV GNDAAKTKEF FPLRGVVAES SSTEKWIGLS FDGGNFNTNR 120 ESEVRVMQQP SQPPKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH 180 AAARAYDRAA IKFRGVEADI NFNLSDYEED LKQMKNLTKE EFVHILRRQS TGFSRGSSKY 240 RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIRCNGRE AVTNFEPSSY 300 EGEMVPGSSC EGGDPNLDLN LGISPPSFGN ALNKVEGRAS FQAEHYSALY GRNSRMENAA 360 AASLGGPPFQ GLVMMQGHTS SWNGCASFFP AEDRAKGQRI EQNPSVGLHD WAWQVNGSVC 420 AAPTRPLLQV SAAASSGFSF SVTPRATALL PPPLSLSSNP TPHNLCFSSS YSPSGSAPSS 480 NPFYHHHPQA KQPPP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MLDLNLNVLS VAESAHEESS AVLLERLSEG SAIQMDESGT SNSSVVNADA GDDDSSSTRA  60
TSGGADACTL SFGILKVHGV GNDAAKTKEF FPLRGVVAES SSTEKWIGLS FDGGNFNTNR  120
ESEVRVMQQP SQPPKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH  180
AAARAYDRAA IKFRGVEADI NFNLSDYEED LKQMKNLTKE EFVHILRRQS TGFSRGSSKY  240
RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIRCNGRE AVTNFEPSSY  300
EGEMVPGSSC EGGDPNLDLN LGISPPSFGN ALNKVEGRAS FQAEHYSALY GRNSRMENAA  360
AASLGGPPFQ GLVMMQGHTS SWNGCASFFP AEDRAKGQRI EQNPSVGLHD WAWQVNGSVC  420
AAPTRPLLQV SAAASSGFSF SVTPRATALL PPPLSLSSNP TPHNLCFSSS YSPSGSAPSS  480
NPFYHHHPQA KQPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-116	AP2 family protein