PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67227.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 719aa MW: 78088.6 Da PI: 6.6082

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OWM67227.1 277 PCPDFRK-GACRRGDMCEYAHG 297 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MSHLTVVTED TFVSLLELAA NNDIEGFKRF IERDPSSIDE VGLWYGRQKG SKQMVNEQRT 60 PLMVAATYGS VEVMKLILSV SDCDVNRSCG LDKSTALHCA ASGGAVNAIE AVKLLLAAGA 120 DPNLTDASGH RPVDVIVVPP KLHQIKFALE ELLSVEGSIG ERNLRISVAT SNSNSPPLSS 180 SPENGSPASA TGTSPMKSKL NDFPAPLVSE KKEYPIDPSL PDIKNSIFST DEFRMYSFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE 300 CWLHPAQYRT RLCKDGTSCA RRVCFFAHTE QELRPLYVST GSAVPSPRSA AASGAAAAAA 360 MDFAAAMSLL PGSPSSVSVM SPSPFTPPMS PSAGNGMSHS SVPWPQQNVP TLHLPGGNLQ 420 SSRLRSSLNA RDIPADEFDM MNDYDLQQQQ QQQQQQQLLN EFSVLSQPSM VANSLNRSGR 480 LKTLTPSNLD DLFSAESSSP RYADQALASA VFSPTHKSAV INQFQQQQQS MLSPINTSFS 540 PKNMDHPLLQ ASFGVPTSGR MSPRNMEPIS PMGSRVSMLA QREKQQQQFR SLSSRELGSN 600 SSAIVGSPVG SWSKWGSSNG KPDWAVSTDE LGKLRRSNSF ELGNNGGEEP DLSWVQSLVK 660 ESPTDLKEKL SSSHCGVPPA TAPSGEVPNI SSQAEPVDHA VLGAWLEQMQ LDQLVTQQN

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MSHLTVVTED TFVSLLELAA NNDIEGFKRF IERDPSSIDE VGLWYGRQKG SKQMVNEQRT  60
PLMVAATYGS VEVMKLILSV SDCDVNRSCG LDKSTALHCA ASGGAVNAIE AVKLLLAAGA  120
DPNLTDASGH RPVDVIVVPP KLHQIKFALE ELLSVEGSIG ERNLRISVAT SNSNSPPLSS  180
SPENGSPASA TGTSPMKSKL NDFPAPLVSE KKEYPIDPSL PDIKNSIFST DEFRMYSFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE  300
CWLHPAQYRT RLCKDGTSCA RRVCFFAHTE QELRPLYVST GSAVPSPRSA AASGAAAAAA  360
MDFAAAMSLL PGSPSSVSVM SPSPFTPPMS PSAGNGMSHS SVPWPQQNVP TLHLPGGNLQ  420
SSRLRSSLNA RDIPADEFDM MNDYDLQQQQ QQQQQQQLLN EFSVLSQPSM VANSLNRSGR  480
LKTLTPSNLD DLFSAESSSP RYADQALASA VFSPTHKSAV INQFQQQQQS MLSPINTSFS  540
PKNMDHPLLQ ASFGVPTSGR MSPRNMEPIS PMGSRVSMLA QREKQQQQFR SLSSRELGSN  600
SSAIVGSPVG SWSKWGSSNG KPDWAVSTDE LGKLRRSNSF ELGNNGGEEP DLSWVQSLVK  660
ESPTDLKEKL SSSHCGVPPA TAPSGEVPNI SSQAEPVDHA VLGAWLEQMQ LDQLVTQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein