PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67101.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

GRAS

Protein Properties

Length: 502aa MW: 55947.9 Da PI: 4.4871

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	115.7	5.8e-36	184	500	75	373
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...............ske 156 ++ aa+++f++ +P+++f+h++aN+aIl ++ + + ++Dfd+++G+QW++ ++a+a+R +g lR+T ++ +e + s + OWM67101.1 184 RNSEAAFQAFYQGFPFMRFAHFAANSAILGSAPRGfgVVIRVVDFDLGEGVQWAPVIEAMAAR-GGVSLLRLTSIKWAEDDpeeakeddshdcpgrSGR 281 45567899*******************88766555556******************9.8899***9987778889999****999 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl....sPkvvvvveqeadh.. 248 +l+ t +rL++ A+e+gv++e + + ++l e ++++ +E + n+++ l+ +++ +l ++L++ ++ + +v++ e +a OWM67101.1 282 RLRDTSRRLSEHAREFGVQLEVDEMRIDELLIEAKEGMAMNGrREWFVFNCMVGLMGRKNRNRKLVG---KFLSAAEEVitanNCGIVTLGEGDAFQkl 377 **********************9777777777777877767***********999988888...8998877664444889****64423 PP GRAS 249 .nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 + + F e f +l +y ++++++e+++p++ e+r +E+ +++++i e+ + + + ++ +a ++ +++s + ++a+ l+ + OWM67101.1 378 kSCSGFGEFFDGCLGHYQTVLECMETEFPSQLlEARLAMEALFVSPSIDPTSWGETWDEVRACSGVMD----GIQARLRGLRVSREGLMEARELVGGKS 472 56679999999***************999************9999999984444443333....33688999*************** PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaW 373 + g e+++++vl W+++pLv +SaW OWM67101.1 473 WYGVGTGERENEMVLQWRGNPLVRFSAW 500 ************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MQSEIFRQTW QFPNFIDSAF NGFDDNQSQL HYFPTKFPDD PLLMDFPIED FLMDFDGYGP 60 IDPITSPPLN GGEESVHGQW SPLSSSSLKS DESSVTEASQ ASGTLSLPAE DMEIDTQLSL 120 QHLAKAFGEA MENGQADLME AVSRCGVEKA NPLGGACDRL VFNLFRRAGR REGCDDYIRQ 180 ECQRNSEAAF QAFYQGFPFM RFAHFAANSA ILGSAPRGFG VVIRVVDFDL GEGVQWAPVI 240 EAMAARGGVS LLRLTSIKWA EDDPEEAKED DSHDCPGRSG RRLRDTSRRL SEHAREFGVQ 300 LEVDEMRIDE LLIEAKEGMA MNGRREWFVF NCMVGLMGRK NRNRKLVGKF LSAAEEVITA 360 NNCGIVTLGE GDAFQKLKSC SGFGEFFDGC LGHYQTVLEC METEFPSQLL EARLAMEALF 420 VSPSIDPTSW GETWDEVRAC SGVMDGIQAR LRGLRVSREG LMEARELVGG KSWYGVGTGE 480 RENEMVLQWR GNPLVRFSAW GR

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MQSEIFRQTW QFPNFIDSAF NGFDDNQSQL HYFPTKFPDD PLLMDFPIED FLMDFDGYGP  60
IDPITSPPLN GGEESVHGQW SPLSSSSLKS DESSVTEASQ ASGTLSLPAE DMEIDTQLSL  120
QHLAKAFGEA MENGQADLME AVSRCGVEKA NPLGGACDRL VFNLFRRAGR REGCDDYIRQ  180
ECQRNSEAAF QAFYQGFPFM RFAHFAANSA ILGSAPRGFG VVIRVVDFDL GEGVQWAPVI  240
EAMAARGGVS LLRLTSIKWA EDDPEEAKED DSHDCPGRSG RRLRDTSRRL SEHAREFGVQ  300
LEVDEMRIDE LLIEAKEGMA MNGRREWFVF NCMVGLMGRK NRNRKLVGKF LSAAEEVITA  360
NNCGIVTLGE GDAFQKLKSC SGFGEFFDGC LGHYQTVLEC METEFPSQLL EARLAMEALF  420
VSPSIDPTSW GETWDEVRAC SGVMDGIQAR LRGLRVSREG LMEARELVGG KSWYGVGTGE  480
RENEMVLQWR GNPLVRFSAW GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-12	GRAS family protein