PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM66781.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB_related

Protein Properties

Length: 677aa MW: 75471.8 Da PI: 9.9356

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM66781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	568	617	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ OWM66781.1 568 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdsvKHRTYVDLKDKWKTL 617 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MVLNRRLEYG FNGYQVPAMP RAARSARRRG SPNKKVEDNN MCAFDLLATV AGKLLVGKDS 60 SPSSSNLSTK QDQCAITVGN IKEEFQAPQK QLELQPYDQG SGDMICLGPK LVPDYHNPVN 120 SFKEANKDAL GCADTIVNSD GSGGLASEKL GKDEMRYFAE KVTLGSVEHG KPSNYNSEDE 180 TKRKNVVELL NSGNAPHGTG ANMYSAIGDQ VVWDAKPLVQ ISSYSNAKMS FKETEEPGPR 240 NLFSQVRDNV ALDSKDDDEN SSGCTHRSTT KNSFKPAPCM GDRRIRKVLA SKYWKVATKW 300 KEKLFSRNDV DLKADGFDKK SFYKRQRSQR NFPFKKRKFF DLNCESNSDG EISGDSCADR 360 EMPSVAGQHS PYQSANPHVR VRIESFRVPE LFIEIPETAT VGSLKRTVME AVTAILGGEL 420 RVGVVLQGKK VGDDSKTLAQ TGICHGNNQV DALGFTLEPN SSQDLRSATP RSSPSLVRRN 480 TSYPHSRYPP ARTEAREGIF DEPQAVNNLG NSAESDRGSA TSPTDLSNKG LADSKALVPV 540 SALNRETLAV VPVRRKSKHS EIAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLRAFD 600 SVKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ QQAKQQLKHH 660 HRRHHHHHHQ PETRLLL

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MVLNRRLEYG FNGYQVPAMP RAARSARRRG SPNKKVEDNN MCAFDLLATV AGKLLVGKDS  60
SPSSSNLSTK QDQCAITVGN IKEEFQAPQK QLELQPYDQG SGDMICLGPK LVPDYHNPVN  120
SFKEANKDAL GCADTIVNSD GSGGLASEKL GKDEMRYFAE KVTLGSVEHG KPSNYNSEDE  180
TKRKNVVELL NSGNAPHGTG ANMYSAIGDQ VVWDAKPLVQ ISSYSNAKMS FKETEEPGPR  240
NLFSQVRDNV ALDSKDDDEN SSGCTHRSTT KNSFKPAPCM GDRRIRKVLA SKYWKVATKW  300
KEKLFSRNDV DLKADGFDKK SFYKRQRSQR NFPFKKRKFF DLNCESNSDG EISGDSCADR  360
EMPSVAGQHS PYQSANPHVR VRIESFRVPE LFIEIPETAT VGSLKRTVME AVTAILGGEL  420
RVGVVLQGKK VGDDSKTLAQ TGICHGNNQV DALGFTLEPN SSQDLRSATP RSSPSLVRRN  480
TSYPHSRYPP ARTEAREGIF DEPQAVNNLG NSAESDRGSA TSPTDLSNKG LADSKALVPV  540
SALNRETLAV VPVRRKSKHS EIAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLRAFD  600
SVKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ QQAKQQLKHH  660
HRRHHHHHHQ PETRLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	338	QRNFPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-123	MYB_related family protein